Detail information of Os04g0443500_circ_g.2


General Information
CircRNA Name Os04g0443500_circ_g.2
ID in PlantcircBase osa_circ_023959
Alias NA
Organism Oryza sativa
Position chr4: 22090737-22092387  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os04g0443500
Parent gene annotation Similar to Protein phosphatase methylesterase 1 (EC 3.1.1.-) (PM
E-1). Splice isoform 3. (Os04t0443500-01)
Parent gene strand +
Alternative splicing Os04g0443500_circ_g.3 Os04g0443500_circ_g.4 Os04g0443500_circ_g.5 Os04g0443500_circ_g.6
Support reads 1
Tissues shoot
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os04t0443500-01:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GCATTGGTTTGTCAATATGTTTTGCAGAGCTTTAACAATTGGTCAAATGCAAGGAAAGTTTCAA
ATGGTGGTGGTTCGACACACTGGACATGCCATACAGattgaatggagtgtcaaaggtgggccac
tcaggaacattgattctgctcgtgtttcgattccatctaccttgaaatatgatgaatcaaggga
atggtaaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence ATTGAATGGAGTGTCAAAGGTGGGCCACTCAGGAACATTGATTCTGCTCGTGTTTCGATTCCAT
CTACCTTGAAATATGATGAATCAAGGGAATGGTAAAAAACTAGCTTGCATAGTACATGCTTGTA
TTTTGCAGTTCAATGCGCATATGCAAAACTCTGCAAAAAAGCTTTACCCTTCCTTGAAAACCTA
AGTGAACTTTCATACTTGGTTTCAGCTATACATATCGAACTCCTCTCGAGGAAACAGAAAAATA
CTGGAAAGGATGGTACGCTTTCAGTTTACTGGTGTTCTTTATGTTTCAATCGCTTCTGTTTAAA
TTCTGGTATTTCTGAACGCCTTTTTGTGATCATTACAATTTAAAAGCATGTTATTACTACTACT
ATATACTGTATAAAAGTATTGGTCATATTTAATTACAAGTATCTAACTCTTCATTACCTACGTA
ACAGTATTGATACTACTGTATTCTCTTATCCCTGTCATGTTTTGATTTAACAAAGATCTACTTT
TTTGGTTCCTACACAGTAATATTAATTCTATTGTATTATTCTCTTATCTTATATGTCTGGAAGC
TTGAGCTATCTTGAATTTATCGAATAAAACAGAGAATAGGGTCAATGAGTTGTTTCAGAAGTGG
TAACCACATAACAAAATAGCAGCAAACATGGGGTGAACTAGGCCAGATTTCAGTTTCAAATAAC
ATCGTTTATTTTTAGGAATACTTGAGTTATTTGTTTATCTCCTTTTGGTTGATACTGAAATATG
AAATGTTTCTGTTTTAGGTATGAAGGTCTTTCTGAAAAGTTCTTGTCTTGTCCAGTGCAAAAGG
TCCTATTATTAGCTGGAACTGATAGGTTGGACAGGTTTGTATTTATCTTTCTAGTGTAATGATG
TTAACAATTTTCTCATTCATGATGATTGCCCTGTTGAACTCGGACCTCTATCATTATTAGCTCA
ATGTAATTTGTATTTAATTGATTACAAAATTTTATGCTTCCTGTTAGCTGCAATGGCATGCTAT
ATATCCTTGGGTTTTCTACGGCCAAGCAGTAGTGCATTTTAAGGAGTTTTAATTAATCTGCCAT
TAGGCTAAACTGCACTAGTGATCAGGCTATCAAAATTTTGTGGCAACCTATTTGTACTGCGAAA
AGCGAATTATATTATAAGTCTTTTGTTTCTGAGGAACATCTGGTTATGTTAAATCAATCAGCTG
GTATGTGTTGAAGTTGATGCCTCAAGATATATGTTCCTATGAAACACAGACCATTGCTTTACTT
CCTCAACCTATGTATAGGTCCTTCCAAAACAGAACTGCACATAGATTACACTTCACAATCTATC
CCACCTGTACAGGTATGCTATCAGATCAGGAAATGAGAAATGACTCGAGCACACAAAATGCTAC
TTCTATTTAAGCTATTTGTCTTATGAAAACTATTCGATTAATGCATATATTTTTCTTATCACCC
ATTCTTAGTGCTTTGATTTGTGAAAATTGCATCATTTTTTAACACTTCTATGAACCATTATGGA
GGACATATTGGTAATGCATTGGTTTGTCAATATGTTTTGCAGAGCTTTAACAATTGGTCAAATG
CAAGGAAAGTTTCAAATGGTGGTGGTTCGACACACTGGACATGCCATACAG
Conservation Information
Conserved circRNAs osi_circ_014405
PMCS 0.112841737
Functional Information
Coding potential Y
Potential coding position 22092335-22092384(+)
22092378-22090806(+)
22090776-22092350(-)
Potential amino acid sequence MQGKFQMVVVRHTGHAIQIEWSVKGGPLRNIDSARVSIPSTLKYDESRECYTYRTPLEETEKYW
KGWYEGLSEKFLSCPVQKVLLLAGTDRLDRALTIGQMQGKFQMVVVRHTGHAIQIEWSVKGGPL
RNIDSARVSIPSTLKYDESRECYTYRTPLEETEKYWKGWYEGLSEKFLSCPVQKVLLLAGTDRL
DRALTIGQMQGKFQMVVVRHTGHAIQIEWSVKGGPLRNIDSARVSIPSTLKYDESRECYTYRTP
LEETEKYWKGWYEGLSEKFLSCPVQKVLLLAGTDRLDRALTIGQMQGKFQMVVVRHTGHAIQ(+
)
MPYRLNGVSKVGHSGTLILLVFRFHLP*(+)
MFLSGPPLTLHSICMACPVCRTTTI*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017