Detail information of Os04g0443500_circ_g.3


General Information
CircRNA Name Os04g0443500_circ_g.3
ID in PlantcircBase osa_circ_023960
Alias Os_ciR4807
Organism Oryza sativa
Position chr4: 22090737-22093051  JBrowse»
Reference genome IRGSP-1.0.38
Type   ue-circRNA
Identification method CIRCexplorer, find_circ
Parent gene Os04g0443500
Parent gene annotation Similar to Protein phosphatase methylesterase 1 (EC 3.1.1.-) (PM
E-1). Splice isoform 3. (Os04t0443500-01)
Parent gene strand +
Alternative splicing Os04g0443500_circ_g.2 Os04g0443500_circ_g.4 Os04g0443500_circ_g.5 Os04g0443500_circ_g.6
Support reads 4/1
Tissues root/shoot
Exon boundary   Yes-No
Splicing signals   GT-AG
Number of exons covered Os04t0443500-01:6
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GAAAACGATGAGGCTTCTATCTCCACCGGATTGCCATATTTTCCACAGGGTAGAAGGTGTTGCA
AGAAGATTGGGGATATCATAGGCACGAGCGATCTAGattgaatggagtgtcaaaggtgggccac
tcaggaacattgattctgctcgtgtttcgattccatctaccttgaaatatgatgaatcaaggga
atggtaaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence ATTGAATGGAGTGTCAAAGGTGGGCCACTCAGGAACATTGATTCTGCTCGTGTTTCGATTCCAT
CTACCTTGAAATATGATGAATCAAGGGAATGGTAAAAAACTAGCTTGCATAGTACATGCTTGTA
TTTTGCAGTTCAATGCGCATATGCAAAACTCTGCAAAAAAGCTTTACCCTTCCTTGAAAACCTA
AGTGAACTTTCATACTTGGTTTCAGCTATACATATCGAACTCCTCTCGAGGAAACAGAAAAATA
CTGGAAAGGATGGTACGCTTTCAGTTTACTGGTGTTCTTTATGTTTCAATCGCTTCTGTTTAAA
TTCTGGTATTTCTGAACGCCTTTTTGTGATCATTACAATTTAAAAGCATGTTATTACTACTACT
ATATACTGTATAAAAGTATTGGTCATATTTAATTACAAGTATCTAACTCTTCATTACCTACGTA
ACAGTATTGATACTACTGTATTCTCTTATCCCTGTCATGTTTTGATTTAACAAAGATCTACTTT
TTTGGTTCCTACACAGTAATATTAATTCTATTGTATTATTCTCTTATCTTATATGTCTGGAAGC
TTGAGCTATCTTGAATTTATCGAATAAAACAGAGAATAGGGTCAATGAGTTGTTTCAGAAGTGG
TAACCACATAACAAAATAGCAGCAAACATGGGGTGAACTAGGCCAGATTTCAGTTTCAAATAAC
ATCGTTTATTTTTAGGAATACTTGAGTTATTTGTTTATCTCCTTTTGGTTGATACTGAAATATG
AAATGTTTCTGTTTTAGGTATGAAGGTCTTTCTGAAAAGTTCTTGTCTTGTCCAGTGCAAAAGG
TCCTATTATTAGCTGGAACTGATAGGTTGGACAGGTTTGTATTTATCTTTCTAGTGTAATGATG
TTAACAATTTTCTCATTCATGATGATTGCCCTGTTGAACTCGGACCTCTATCATTATTAGCTCA
ATGTAATTTGTATTTAATTGATTACAAAATTTTATGCTTCCTGTTAGCTGCAATGGCATGCTAT
ATATCCTTGGGTTTTCTACGGCCAAGCAGTAGTGCATTTTAAGGAGTTTTAATTAATCTGCCAT
TAGGCTAAACTGCACTAGTGATCAGGCTATCAAAATTTTGTGGCAACCTATTTGTACTGCGAAA
AGCGAATTATATTATAAGTCTTTTGTTTCTGAGGAACATCTGGTTATGTTAAATCAATCAGCTG
GTATGTGTTGAAGTTGATGCCTCAAGATATATGTTCCTATGAAACACAGACCATTGCTTTACTT
CCTCAACCTATGTATAGGTCCTTCCAAAACAGAACTGCACATAGATTACACTTCACAATCTATC
CCACCTGTACAGGTATGCTATCAGATCAGGAAATGAGAAATGACTCGAGCACACAAAATGCTAC
TTCTATTTAAGCTATTTGTCTTATGAAAACTATTCGATTAATGCATATATTTTTCTTATCACCC
ATTCTTAGTGCTTTGATTTGTGAAAATTGCATCATTTTTTAACACTTCTATGAACCATTATGGA
GGACATATTGGTAATGCATTGGTTTGTCAATATGTTTTGCAGAGCTTTAACAATTGGTCAAATG
CAAGGAAAGTTTCAAATGGTGGTGGTTCGACACACTGGACATGCCATACAGGTTAGCTCCTAGC
CTCCTACAGTCCTACCGTAAGGCTTTCAACATTATTATTCTAATGATATCAAGGCACCCCCTTT
CTAGCATTATTTCAATTTCTGCTTTTCTCCCTGCTCCTAGAGCCATCCTGCCTAGCAGCTCTAG
GGTTTACTTTAAAAAAGTCACAAAAACCAATAATATGTAGAGGCAGCACATGAATTAACAACCA
AAGGTTCATTTATCGAGTGTTGTTCGTTATGTTATGTAAGTATGATTGCTAACAAGATCATCGA
GCTGATGAATTATTTTGTAATGGATTGTTAACATACCATCGAAAATTTCCTTTCAGGAAGATGT
GCCTGAAGAATTTGCATCGCACATACTAAATTTCATAGCTCGCAACAAAATAGGTCCTAATGGT
GTTGAGGTCAGTACTGCCTTAGCATTACACTTTTCAAATATTTACTCTTTTACCCATTTTTCAA
TGAACCTAATGCCTGTTACTTTTCTTCTCAGATTCCTGGACTGATTAAAAAATGGCAGCATTAG
ACGGAACGGACCTTGCGTTCCAATGTTGACAGTTTTTAGGAAAACGATGAGGCTTCTATCTCCA
CCGGATTGCCATATTTTCCACAGGGTAGAAGGTGTTGCAAGAAGATTGGGGATATCATAGGCAC
GAGCGATCTAG
Conservation Information
Conserved circRNAs osi_circ_005490*
PMCS 0.106150781
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015;Chu et al., 2017