Detail information of Os04g0443500_circ_g.6


General Information
CircRNA Name Os04g0443500_circ_g.6
ID in PlantcircBase osa_circ_023963
Alias Os_ciR9356
Organism Oryza sativa
Position chr4: 22092073-22092255  JBrowse»
Reference genome IRGSP-1.0.38
Type   i-circRNA
Identification method find_circ
Parent gene Os04g0443500
Parent gene annotation Similar to Protein phosphatase methylesterase 1 (EC 3.1.1.-) (PM
E-1). Splice isoform 3. (Os04t0443500-01)
Parent gene strand +
Alternative splicing Os04g0443500_circ_g.2 Os04g0443500_circ_g.3 Os04g0443500_circ_g.4 Os04g0443500_circ_g.5
Support reads 2
Tissues root
Exon boundary   No-No
Splicing signals   CT-AC
Number of exons covered 0
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTATGAAAACTATTCGATTAATGCATATATTTTTCTTATCACCCATTCTTAGTGCTTTGATTTG
TGAAAATTGCATCATTTTTTAACACTTaatctatcccacctgtacaggtatgctatcagatcag
gaaatgagaaatgactcgagcacacaaaatgctacttctatttaagctatttgtc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence AATCTATCCCACCTGTACAGGTATGCTATCAGATCAGGAAATGAGAAATGACTCGAGCACACAA
AATGCTACTTCTATTTAAGCTATTTGTCTTATGAAAACTATTCGATTAATGCATATATTTTTCT
TATCACCCATTCTTAGTGCTTTGATTTGTGAAAATTGCATCATTTTTTAACACTT
Conservation Information
Conserved circRNAs NA
PMCS 0.261347905
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015