Detail information of Os12g0129300_circ_g.1


General Information
CircRNA Name Os12g0129300_circ_g.1
ID in PlantcircBase osa_circ_010417
Alias Os_ciR7321
Organism Oryza sativa
Position chr12: 1398243-1398678  JBrowse»
Reference genome IRGSP-1.0.38
Type   i-circRNA
Identification method find_circ
Parent gene Os12g0129300
Parent gene annotation Similar to Arabinoxylan arabinofuranohydrolase isoenzyme AXAH-II
. (Os12t0129300-01)
Parent gene strand +
Alternative splicing Os12g0128700_circ_g.1 Os12g0128700_circ_g.2 Os12g0128700_circ_g.3 Os12g0128700_circ_igg.1 Os12g0128700_circ_g.2 Os12g0128700_circ_ag.1 Os12g0128700_circ_g.2 Os12g0128700_circ_g.3 Os12g0128700_circ_g.4 Os12g0128800_circ_g.1 Os12g0128800_circ_g.2 Os12g0129000_circ_g.1 Os12g0129000_circ_g.2
Support reads 2
Tissues root
Exon boundary   No-No
Splicing signals   GT-AG
Number of exons covered 0
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GAGGGATTGGGGTGTGTGTGCGCGCGAAGATTTCTTTTGTTAGCGCTTGCTTTATATTCATTAT
GTGTTCACTGCAATCTGAATATTCTAGATTATGCTCgtcagattttgcctatttagctctgtca
gttcatcttatcgcgtcactttctctgccggcatcaaaatatgttaggatgagatcaataattt
agtcaacc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTCAGATTTTGCCTATTTAGCTCTGTCAGTTCATCTTATCGCGTCACTTTCTCTGCCGGCATCA
AAATATGTTAGGATGAGATCAATAATTTAGTCAACCTTACCTAACTGCTGCAGCTAGTCTTTTC
AGTTGAATTTACCATTGTTCACACTACACTGCACTGTATTAACTATGGTGGTTCTTCATATATC
TTCATGCAAATCTTCTTTCTGGTTTCAGAAAATAACTCCTATGTTGTACATGTTTTCTCATTCC
ACTGTTTCCTTTTCCACCACTATTTTGTGTGGATGCCGGTGTTATAATTTTGTCTGCATTACTT
CTAGTCAGGGAAAGAGGAGGGATTGGGGTGTGTGTGCGCGCGAAGATTTCTTTTGTTAGCGCTT
GCTTTATATTCATTATGTGTTCACTGCAATCTGAATATTCTAGATTATGCTC
Conservation Information
Conserved circRNAs NA
PMCS 0.111429511
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015