Detailed infomation of each circRNA
General Information | |
---|---|
CircRNA Name | Os12g0128800_circ_g.2 |
ID in PlantcircBase | osa_circ_010414 |
Alias | NA |
Organism | Oryza sativa |
Position | chr12: 1372229-1372554 JBrowse» |
Reference genome | IRGSP-1.0.38 |
Type | ue-circRNA |
Identification method | CIRCexplorer |
Parent gene | Os12g0128800 |
Parent gene annotation |
Similar to Arabinoxylan arabinofuranohydrolase isoenzyme AXAH-I. (Os12t0128800-01);Similar to cDNA clone:J033138B08, full insert sequence. (Os12t0128800-02) |
Parent gene strand | + |
Alternative splicing | Os12g0128700_circ_g.1 Os12g0128700_circ_g.2 Os12g0128700_circ_g.3 Os12g0128700_circ_igg.1 Os12g0128700_circ_g.2 Os12g0128700_circ_ag.1 Os12g0128700_circ_g.2 Os12g0128700_circ_g.3 Os12g0128700_circ_g.4 Os12g0128800_circ_g.1 Os12g0129000_circ_g.1 Os12g0129000_circ_g.2 Os12g0129300_circ_g.1 |
Support reads | 2 |
Tissues | root |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Os12t0128800-01:2 Os12t0128800-02:1 |
Conservation Information | |
---|---|
Conserved circRNAs | NA |
PMCS | 0.123977147 |
Functional Information | |
---|---|
Coding potential | Y |
Potential coding position |
1372299-1372271(+) 1372500-1372539(-) |
Potential amino acid sequence |
MARLGHLIILPISMTTIYMKMHPLCFSRRMNLIGHHVMVQRKLSQVLQRHKRGLS*(+) MHFHIYGSHRDRQDDQVAQTSHHSLKLFGCQDKPLLWRCRTWDNFLWTIT*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
---|---|
References | Chu et al., 2017 |