Detail information of Os12g0128800_circ_g.2


General Information
CircRNA Name Os12g0128800_circ_g.2
ID in PlantcircBase osa_circ_010414
Alias NA
Organism Oryza sativa
Position chr12: 1372229-1372554  JBrowse»
Reference genome IRGSP-1.0.38
Type   ue-circRNA
Identification method CIRCexplorer
Parent gene Os12g0128800
Parent gene annotation Similar to Arabinoxylan arabinofuranohydrolase isoenzyme AXAH-I.
(Os12t0128800-01);Similar to cDNA clone:J033138B08, full insert
sequence. (Os12t0128800-02)
Parent gene strand +
Alternative splicing Os12g0128700_circ_g.1 Os12g0128700_circ_g.2 Os12g0128700_circ_g.3 Os12g0128700_circ_igg.1 Os12g0128700_circ_g.2 Os12g0128700_circ_ag.1 Os12g0128700_circ_g.2 Os12g0128700_circ_g.3 Os12g0128700_circ_g.4 Os12g0128800_circ_g.1 Os12g0129000_circ_g.1 Os12g0129000_circ_g.2 Os12g0129300_circ_g.1
Support reads 2
Tissues root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os12t0128800-01:2
Os12t0128800-02:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTCTGAGAATGTTACATTTATTCTGTAGATATATGAAAATGCATCCACTGTGTTTTTCAAGAAG
AATGAATTTGATAGGACATCACGTAATGGTCCAAAGaaaattatcccaagttctacaacgccat
aaaagaggcttatcctgacatccaaataatttcaaactgtgatggctcgtctgggccacttgat
catcctgc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence AAAATTATCCCAAGTTCTACAACGCCATAAAAGAGGCTTATCCTGACATCCAAATAATTTCAAA
CTGTGATGGCTCGTCTGGGCCACTTGATCATCCTGCCGATCTCTATGACTACCATGTAAACAAC
TCACTGAGACTAATTTATTTCTATCATTCTCCCTATTTTTAAATTCTGTCTTGCTGGTTTTTTT
CAGACTTGGTTATGTGATCATTTTCTCCATAGATTTCTGAGAATGTTACATTTATTCTGTAGAT
ATATGAAAATGCATCCACTGTGTTTTTCAAGAAGAATGAATTTGATAGGACATCACGTAATGGT
CCAAAG
Conservation Information
Conserved circRNAs NA
PMCS 0.123977147
Functional Information
Coding potential Y
Potential coding position 1372299-1372271(+)
1372500-1372539(-)
Potential amino acid sequence MARLGHLIILPISMTTIYMKMHPLCFSRRMNLIGHHVMVQRKLSQVLQRHKRGLS*(+)
MHFHIYGSHRDRQDDQVAQTSHHSLKLFGCQDKPLLWRCRTWDNFLWTIT*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017