Detail information of Os12g0128700_circ_g.3


General Information
CircRNA Name Os12g0128700_circ_g.3
ID in PlantcircBase osa_circ_010411
Alias NA
Organism Oryza sativa
Position chr12: 1363821-1364489  JBrowse»
Reference genome IRGSP-1.0.38
Type   i-circRNA
Identification method CIRCexplorer
Parent gene Os12g0128700
Parent gene annotation Similar to Arabinoxylan arabinofuranohydrolase isoenzyme AXAH-II
. (Os12t0128700-01)
Parent gene strand +
Alternative splicing Os12g0128700_circ_g.1 Os12g0128700_circ_g.2 Os12g0128700_circ_g.3 Os12g0128700_circ_igg.1 Os12g0128700_circ_g.2 Os12g0128700_circ_ag.1 Os12g0128700_circ_g.2 Os12g0128700_circ_g.4 Os12g0128800_circ_g.1 Os12g0128800_circ_g.2 Os12g0129000_circ_g.1 Os12g0129000_circ_g.2 Os12g0129300_circ_g.1
Support reads 4
Tissues shoot, root
Exon boundary   No-No
Splicing signals   GT-CG
Number of exons covered 0
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATTGGGATGCAATTTTTTTATGTTTGATCATAATCCCCAATGGTACTGCACAAGTTTTACTTGA
ACTGTGTGGAGAGCAACTGTTGAGTTCTCCTTTTAGgtatattcctcatccaatttcatatttt
atccacttgaccatataactgcataagttgaagaggcttgtctggataattaagaaggtgtatg
atcgagga
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 669
Transcript exons: 1363821-1364489
GTATATTCCTCATCCAATTTCATATTTTATCCACTTGACCATATAACTGCATAAGTTGAAGAGG
CTTGTCTGGATAATTAAGAAGGTGTATGATCGAGGAAAAGGATATGCACATGAACCATGCTAAT
TATGTAAAATATATTTTATGGATTTAGTCACTCAACTCACTCTCTATCCACTTTCAATACTGGG
CTTTGATTTTGTGATTGGACGTGTATTTCAAATAATATTAGCTCAATAAAATAAATCTCTACAT
GAACCAGAGGGAAATATAGTCCACAACTTCTTTATGATGCTGTTTCTGTTTCCTGAGAAGTCGT
TCATTAATTTAGTCACATAAAATCTCCATAGAAAAACCTTACAAGGTGACATTTGTTTCTTACA
CTATTTCAATTAGTATATAATATTAATTTTTTTATGTCATATGTTCTTTTTCCTCTTTTATACT
CACAGTAATATACGTTGTTATTTTTTATCGTTGCAAATAAAGTAGGATTAGTAATACATAAAAA
CAAGTCCTGGAAGCAAAAACTACTAAAATGTGGTTATTTTCATTATTTTTTAAAAAAATTGGGA
TGCAATTTTTTTATGTTTGATCATAATCCCCAATGGTACTGCACAAGTTTTACTTGAACTGTGT
GGAGAGCAACTGTTGAGTTCTCCTTTTAG

Genomic sequence GTATATTCCTCATCCAATTTCATATTTTATCCACTTGACCATATAACTGCATAAGTTGAAGAGG
CTTGTCTGGATAATTAAGAAGGTGTATGATCGAGGAAAAGGATATGCACATGAACCATGCTAAT
TATGTAAAATATATTTTATGGATTTAGTCACTCAACTCACTCTCTATCCACTTTCAATACTGGG
CTTTGATTTTGTGATTGGACGTGTATTTCAAATAATATTAGCTCAATAAAATAAATCTCTACAT
GAACCAGAGGGAAATATAGTCCACAACTTCTTTATGATGCTGTTTCTGTTTCCTGAGAAGTCGT
TCATTAATTTAGTCACATAAAATCTCCATAGAAAAACCTTACAAGGTGACATTTGTTTCTTACA
CTATTTCAATTAGTATATAATATTAATTTTTTTATGTCATATGTTCTTTTTCCTCTTTTATACT
CACAGTAATATACGTTGTTATTTTTTATCGTTGCAAATAAAGTAGGATTAGTAATACATAAAAA
CAAGTCCTGGAAGCAAAAACTACTAAAATGTGGTTATTTTCATTATTTTTTAAAAAAATTGGGA
TGCAATTTTTTTATGTTTGATCATAATCCCCAATGGTACTGCACAAGTTTTACTTGAACTGTGT
GGAGAGCAACTGTTGAGTTCTCCTTTTAG
Conservation Information
Conserved circRNAs NA
PMCS 0.330098742
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017