Detail information of BGIOSGA033172_circ_g.2


General Information
CircRNA Name BGIOSGA033172_circ_g.2
ID in PlantcircBase osi_circ_008545
Alias Chr10:20384414_20386977(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr10: 17412362-17414925  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRCexplorer2
Parent gene BGIOSGA033172
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA033172_circ_g.1 BGIOSGA033172_circ_g.3
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   GT-CA
Number of exons covered BGIOSGA033172-TA:10
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GATAATGTTTTCACGATGGTTTCTGCAGTTCTATGGCTAGGAGATGTCTCTTTCACGGTCATTG
ACAACGAAAACCATGTTGAGATTGTTGTAGATGAAGgaagcacagggttttttgccagcttcca
aatagtgattgggccttatgcactgtaattacaacctccggtgacgattccgtactaaagcttc
ctgaagga
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GAAGCACAGGGTTTTTTGCCAGCTTCCAAATAGTGATTGGGCCTTATGCACTGTAATTACAACC
TCCGGTGACGATTCCGTACTAAAGCTTCCTGAAGGAAAAGTAAGCAACCTAATTTGCTTTGTTG
AAGGCCTTATGGTTGGTTTCAGAGTATGATAATCTGATTCTCAGTCATCTGATTTAAGGTACTG
AGGTTGAAAACAGAGAGCCTTGAAGCTGCAAATCCTGAAATTCTTGACGGGGTGGATGATCTTA
TGCAGCTAAGTTATCTAAGTGAGCCATCCGTTCTGTACAATTTGCAGTACAGATACACTCAAGA
CTTGATATATGTAAGGATAAATCTGAACTTCTTTTCTCCTTTATTTGGGAGTTCTATGGCTTTT
ATAGTGATACTATATTGTACTGTAGACTAAAGCAGGTCCAGTTTTGGTGGCGGTCAATCCTTTT
AAGAAAGTTCCTCTATATGGTAATGAGTACATTGATGCATATAGAAATAAAACAAAGGATAGCC
CACACGTTTATGCAATAGCAGATTCAGCCCTCCGTGAAATGAAAAGAGGTAATTCCACTTCTGT
TAATACAACTACATATGTCTTGATGGCGCCATCTAAATTGAGAACTAACTAAGTATTATGTTCA
TTTACAGATGAAGTTAACCAGTCTATCATCATAAGGTTGGTATTCTTTTTTCCAAGTTGGAAGC
ATTTAATGGAATTCTTAGTGCAAGGAAGTCTTGCACCATAGTTGATGTACCATCTTAATATGTT
AAGCCACACAAGTATGCATTTTCATAGTAATAGGTTTCATTTTCTGTTACTTTTGCTGCATGTA
AGTAGAATTAATAGTGCCCCAACTACCAGCCAACATACTTGCTGAACTAGTTTTCTCATTGACA
GATGGATTCCTGTATTGTTCATTTATCAAGATCAGAACATAAGGGTTTTACTGAGATGATTAAA
CGATCCCACTGTTCTTTGGCTTTCTAGAGTTAGAAATTTAATGGTTGCCTAAGATATACAATTG
GCGAGTCAACATTCAAATATTATGCACATTTTCCATTATGTTACCCTTGTTTTTTTCTCTTTCT
TTCCTGTAACACCAAAACTTTTACCTTTTTGTATGTCTATCAAATCCTGTGAAAAATCCGATGA
CAACATAATGCCATCTGGTAGAAATATTGTACTTTGATTACAAGTTAACAGTTAGCTTGTTTTT
TGAGGTAATTTTTTTAATTGATGTCATTTTTAATTATACCATGGTATATATTGATTATATGAAT
GAAGGATGTCTTCTTTTTAATATATATAGTGGTGAGAGTGGAGCAGGAAAGACAGAAACTGCAA
AGATTGCTATGCAGTATTTGGCTTCTCTTGGAGGTGGGGGTGGCATAGAATATGAGATCCTACA
AACCAACCCAATACTCGAGGCTTTTGGCAACGCAAAGACACTAAGAAATGACAACTCAAGTCGC
TTTGTAAGTAATTTCTTGTGGGTATTGTAATACCACAATGTAGAACAAAGAGTTTGATTGATAT
CCTTGTTTTGTATTACAGGGAAAGCTCATTGAAATTCATTTTAGTACAACTGGAAGGATTTGTG
GTGCCATGATTCAAACATGTATGTGAATTTGTACTGAGTACCCATTTTCAATATAATGTACCAT
TTTCTGGTTTCAGATTGATTTTCTTACTTTTACTGACAATCTCCCCTAATGTTTCACCGTATGG
CCAGTTCTACTTGAGAAGGTAACTCCTAAATTTGTGAATGTCCCTTTTCCTTATAAAAACGAAT
ATGATATTTCACGAAGTGTAATTTAAACTGACATCCATTTTAACCTATGCCAGTCAAGGGTTGT
ACAATGTGCAGTTGGCGAGCGCTCCTACCATATTTTTTATCAACTATGTGCCGGTGCTCCTGCG
TCCCTCAGAGGTACATATGACAGTGTCTGATTATACCATCACAGGCTTGTTTTTAGTATATCGT
ATCTTTTCTATGTATTGAAAGATTTCTTGTCTGTCTCGCTCAGTTTTTAACACAGATTCTATGC
TACGTTTTCACTGTTGACAGTTCTCTGTTTCTTCTTTGTTGCTCATCTATTTTGCTCTGTGGAC
AGTACTTGGCAAGAGCAAACCATTGTTACCTTGTAAACTTACTTCTAGTGTTCTGATACAGATA
AGTTGAATATGAAGAAAGCGGATGAATACAAATATTTGAAGCAGAGTTGCTGCTATTCAATTGC
CGGTGTGGATGATGCTCAAATGTTCCGTACTGTAACGGTATGACACTTCTGATGTCTCATTCTA
CACATGCCCCTTTTTGTGTGCAATAGGACTATACCATACCATGTTACAATAATCCTATCGATGC
ATGTCAGTAGTATTATATTTTTGCTGCTACCACGTTTCTGACTGCTTGGCATTTCAGGAAGCTA
TGAACATCGTTCATATCAGCAAAGAGGACCAAGATAATGTTTTCACGATGGTTTCTGCAGTTCT
ATGGCTAGGAGATGTCTCTTTCACGGTCATTGACAACGAAAACCATGTTGAGATTGTTGTAGAT
GAAG
Conservation Information
Conserved circRNAs osa_circ_007212
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021