Detail information of BGIOSGA033172_circ_g.3


General Information
CircRNA Name BGIOSGA033172_circ_g.3
ID in PlantcircBase osi_circ_001104
Alias NA
Organism Oryza sativa ssp. indica
Position chr10: 17413262-17413763  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method DCC
Parent gene BGIOSGA033172
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA033172_circ_g.1 BGIOSGA033172_circ_g.2
Support reads NA
Tissues leaf
Exon boundary   No-No
Splicing signals   CC-TG
Number of exons covered BGIOSGA033172-TA:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TATATAGTGGTGAGAGTGGAGCAGGAAAGACAGAAACTGCAAAGATTGCTATGCAGTATTTGGC
TTCTCTTGGAGGTGGGGGTGGCATAGAATATGAGATgattcctgtattgttcatttatcaagat
cagaacataagggttttactgagatgattaaacgatcccactgttctttggctttctagagtta
gaaattta
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GATTCCTGTATTGTTCATTTATCAAGATCAGAACATAAGGGTTTTACTGAGATGATTAAACGAT
CCCACTGTTCTTTGGCTTTCTAGAGTTAGAAATTTAATGGTTGCCTAAGATATACAATTGGCGA
GTCAACATTCAAATATTATGCACATTTTCCATTATGTTACCCTTGTTTTTTTCTCTTTCTTTCC
TGTAACACCAAAACTTTTACCTTTTTGTATGTCTATCAAATCCTGTGAAAAATCCGATGACAAC
ATAATGCCATCTGGTAGAAATATTGTACTTTGATTACAAGTTAACAGTTAGCTTGTTTTTTGAG
GTAATTTTTTTAATTGATGTCATTTTTAATTATACCATGGTATATATTGATTATATGAATGAAG
GATGTCTTCTTTTTAATATATATAGTGGTGAGAGTGGAGCAGGAAAGACAGAAACTGCAAAGAT
TGCTATGCAGTATTTGGCTTCTCTTGGAGGTGGGGGTGGCATAGAATATGAGAT
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Guria et al., 2019