Detail information of BGIOSGA030331_circ_g.2


General Information
CircRNA Name BGIOSGA030331_circ_g.2
ID in PlantcircBase osi_circ_007963
Alias 9:2707230|2715197
Organism Oryza sativa ssp. indica
Position chr9: 2707230-2715197  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA030331
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA030331_circ_g.1 BGIOSGA030331_circ_g.3 BGIOSGA030331_circ_g.4 BGIOSGA030331_circ_g.5 BGIOSGA030331_circ_g.6 BGIOSGA030331_circ_g.7 BGIOSGA030331_circ_g.8 BGIOSGA030331_circ_g.9
Support reads NA
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered BGIOSGA030331-TA:10
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATACCAAAATGTTCTGAATTCTTTTGATGGTAACATCTTCCTTCGTAGGTCGGATTCTCATTGG
CCTTTGTAATCCATGAGTCAGCAAATCCTCATATCGgctcggttggcttattcgatttattagc
cattctgtcatatctggctttactactgcttcagctattgtaattggtctgtcacagatcaagt
atttcttg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TOO LONG (>5KB) TO SHOW GENOMIC SEQUENCE OF THIS CIRCULAR RNA. PLEASE FIND THE CORRESPONDING GENOMIC SEQUENCE AT DOWNLOAD SECTION.
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential Y
Potential coding position 2707270-2715015(-)
2707630-2707297(+)
Potential amino acid sequence MTEWLINRISQPSRYEDLLTHGLQRPMRIRPQQEHQSQYQKLML*(-)
MGSSFFVILLIMKNLGKSNKRLRFLRASGPLTAVVFGTIFVKIFHPSSISVVGEIPQGLPKFSI
PRGFEHLMSLMPTAVLITGVAILESVGIAKALAAKNGYELDPNKELFGLGIANICGSFFSSYPA
TGSFSRSAVNHESGAKTGLSGIIMGIIIGGALLFMTPLFTDIPQCALAAIVISAVTSLVDYEEA
IFLWSIDKKDFFLWAITFITTLIFGIEIGVLVGVGFSLAFVIHESANPHIGSVGLFDLLAILSY
LALLLLQLL*(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021