Detailed infomation of each circRNA
| General Information | |
|---|---|
| CircRNA Name | Os11g0600700_circ_g.4 |
| ID in PlantcircBase | osa_circ_009750 |
| Alias | NA |
| Organism | Oryza sativa |
| Position | chr11: 23068901-23070085 JBrowse» |
| Reference genome | IRGSP-1.0.38 |
| Type | e-circRNA |
| Identification method | CIRCexplorer, PcircRNA_finder |
| Parent gene | Os11g0600700 |
| Parent gene annotation |
Similar to RING domain protein. (Os11t0600700-01);Similar to RIN G domain protein. (Os11t0600700-02) |
| Parent gene strand | + |
| Alternative splicing | Os11g0600700_circ_g.1 Os11g0600700_circ_g.2 Os11g0600700_circ_g.3 Os11g0600700_circ_g.5 Os11g0600700_circ_g.6 |
| Support reads | 1 |
| Tissues | seed |
| Exon boundary | Yes-Yes |
| Splicing signals | GT-AG |
| Number of exons covered | Os11t0600700-01:3 Os11t0600700-02:3 |
| Conservation Information | |
|---|---|
| Conserved circRNAs | NA |
| PMCS | 0.126301322 |
| Functional Information | |
|---|---|
| Coding potential | Y |
| Potential coding position |
23070025-23069818(+) 23069777-23068903(-) |
| Potential amino acid sequence |
MMNMLVLMLVVLHSAVLLHLYMLIELVCNAGAMRKETLHVKSVMSNISMDTQLHLVLNQTIPS* (+) MLILLMTDFTCNVSFLIAPALHTSSMSIYKCSRTAECSTTSISTSIFIILSFKKTTLCSRYSNN SWVTCPITTDIYDGIVWFNTRWSCVSMLILLMTDFTCNVSFLIAPALHTSSMSIYKCSRTAECS TTSISTSIFIILSFKKTTLCSRYSNNSWVTCPITTDIYDGIVWFNTRWSCVSMLILLMTDFTCN VSFLIAPALHTSSMSIYKCSRTAECSTTSISTSIFIILSFKKTTLCSRYSNNSWVTCPITTDIY DGIVWFNTRWSCVSMLILLMTDFTCNVSFLIAPALHTSSMSI(-) |
| Sponge-miRNAs | NA |
| circRNA-miRNA-mRNA network | VISUALIZATION |
| Potential function description | NA |
| Other Information | |
|---|---|
| References | Chu et al., 2017 |