Detail information of Os11g0600700_circ_g.4


General Information
CircRNA Name Os11g0600700_circ_g.4
ID in PlantcircBase osa_circ_009750
Alias NA
Organism Oryza sativa
Position chr11: 23068901-23070085  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer, PcircRNA_finder
Parent gene Os11g0600700
Parent gene annotation Similar to RING domain protein. (Os11t0600700-01);Similar to RIN
G domain protein. (Os11t0600700-02)
Parent gene strand +
Alternative splicing Os11g0600700_circ_g.1 Os11g0600700_circ_g.2 Os11g0600700_circ_g.3 Os11g0600700_circ_g.5 Os11g0600700_circ_g.6
Support reads 1
Tissues seed
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os11t0600700-01:3
Os11t0600700-02:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGTAGCGGCTGCACAACGTCGTCTTCTTGAAACTGAGTATGATGAATATGCTGGTACTGATGCT
AGTGGTGCTGCATTCTGCCGTTCTGCTGCACTTATAtatgctcatagagcttgtgtgcaacgct
ggtgcaatgagaaaggagacattacatgtgaaatctgtcatgaggtcagtaagatttcttctct
actactcc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TATGCTCATAGAGCTTGTGTGCAACGCTGGTGCAATGAGAAAGGAGACATTACATGTGAAATCT
GTCATGAGGTCAGTAAGATTTCTTCTCTACTACTCCATTACTACGCATTGCTTTCTAGTTCTTA
TCTAGAGGCTAAGATAGCACCTATTTTGATATGTGTGCATCCAAATTGCAGTATATTTGTTTCT
TCTTAGGACTTCATTTGTCAAATGTTCTGATCTGACCTTGACCTGATGATTTGACTTGTTCTTT
CTGCAATCTCACGTCCTCACCAATACAATATTGCTGTTGCGATAGCTGAATTCCTCTTTAATGC
CATATGCACCTTTTTCTTGATGTGTGCTGCTTGCTCTTCTTCTTTCACATAGGCCTCACTCCAT
ACAGGATCATGGCTTTTGTGTGACAACCTTGAACTCATTTAGTGTTGTCTATCTGCCATTACAC
CGTTACCATTTGAAGTTGCTTGGGGAGCGAGAGCTAAAGCAGCTCATTTTTATTTTAATCAATA
TTAGTTGATTTGAAGTAATCTGAGTGACGGGGACAGGTCGTGATAAATTGGGTAGATTTGAGTT
TTTCCATGGGTGCTTAGTTGTGGCCTTCCAATTTAGTATTAGTTCGATCTTTTCCTTTCCTTTC
ATGAGCTTAAAACCAGCATTTAGTTTTAGGAGAATGTAGGGGAGACCGGGAGAGCCCTACTATG
CTGGTACATTGCATGCTTTTGTGATTGATTAACTGTTTATGTTTCAAATATGTTTATACTCGTA
GAATACCTGTAGCTTCTTTCAGTCTTCTGTAGATTTTCCAATGTGTTTCCGTTCCTGTGTATTA
ATTTCGTTGAGGCTTGTATTTTCTTCTGCAGCAATATAAGCATGGATACACAGCTCCACCTCGT
GTTGAACCAGACGATACCATCATAGATATCGGGTAAGTTATTTCTGTACTTATTTTGCTTAAAT
TTACCAGTTTGTCCATTTGATTATATTGTGTTCAAGTGCCTTTGAAATTTGAAAATTTAGAACA
TTTCTAAGTCAATACTGTTGGCTTGCAGTGGTGATTGGGCACGTGACCCAAGAATTATTGCTGT
AGCGGCTGCACAACGTCGTCTTCTTGAAACTGAGTATGATGAATATGCTGGTACTGATGCTAGT
GGTGCTGCATTCTGCCGTTCTGCTGCACTTATA
Conservation Information
Conserved circRNAs NA
PMCS 0.126301322
Functional Information
Coding potential Y
Potential coding position 23070025-23069818(+)
23069777-23068903(-)
Potential amino acid sequence MMNMLVLMLVVLHSAVLLHLYMLIELVCNAGAMRKETLHVKSVMSNISMDTQLHLVLNQTIPS*
(+)
MLILLMTDFTCNVSFLIAPALHTSSMSIYKCSRTAECSTTSISTSIFIILSFKKTTLCSRYSNN
SWVTCPITTDIYDGIVWFNTRWSCVSMLILLMTDFTCNVSFLIAPALHTSSMSIYKCSRTAECS
TTSISTSIFIILSFKKTTLCSRYSNNSWVTCPITTDIYDGIVWFNTRWSCVSMLILLMTDFTCN
VSFLIAPALHTSSMSIYKCSRTAECSTTSISTSIFIILSFKKTTLCSRYSNNSWVTCPITTDIY
DGIVWFNTRWSCVSMLILLMTDFTCNVSFLIAPALHTSSMSI(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017