Detail information of Os03g0192800_circ_igg.1


General Information
CircRNA Name Os03g0192800_circ_igg.1
ID in PlantcircBase osa_circ_018327
Alias Os_ciR3879
Organism Oryza sativa
Position chr3: 4837907-4840944  JBrowse»
Reference genome IRGSP-1.0.38
Type   igg-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing Os03g0192800_circ_ig.1 Os03g0192800_circ_ig.2
Support reads 2
Tissues root
Exon boundary   Yes-No
Splicing signals   GT-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTGAATTTAATGATTGGTAATTTTTCAGCATTCAAGATTGTTGCAAAGGCCCTTGGATCTAGTT
TGCAAGCGTGGGACTATCACTCAGAAAGCATCAAATgtgctcatcatgtggaagggattccgaa
gcatcttcaaagatggaagacttttacgaactggagcttaacattaaaggtttaaataatctag
aacaaagt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTGCTCATCATGTGGAAGGGATTCCGAAGCATCTTCAAAGATGGAAGACTTTTACGAACTGGAG
CTTAACATTAAAGGTTTAAATAATCTAGAACAAAGTTTGGATGACTATTTGAGTACTGAGGCAC
TGGATGGAGAGAACCAGTACTTCTGTGAGTCATGTCAGAAAAGGGTAGATGCCACTCGTTGCAT
AAAACTTCGCTCACTTCCTCCTGTTGTTAATTTTCAGCTGAAACGCTATGTATTCCTCCCAAAG
GTGTAGCTTGCTTTATATTCCTTCTGTTTGTTTGTTCGTTTGATTGTGTATTTGAGCAAGAAAT
TTGTCTAACTCGTTTCGTCCACAGACAACAACAAAGAAAAAGATTTCTTCGGCATTCAGTTTCC
CAGGACAGCTAGATATGGGGAAGCGGTTATCCAATCCTTCATCTAGTTATACGTATGGCCTGTC
TGCTATTTTGATCCACAAGGGTAGTGCTGCCAATAGTGGGCACTATGTAGCACATGTAAAGGAC
GAAAGCAATGGTCAATGGTGGGAGTTTGATGATGAGCATGTATCCAAGCTTGGTCTTCATCCCT
TTGGTGAAAAACCAGGCAAATCATCCGATAAAACTGATCAGAAACCCCAGGGTAGTTCTACAGC
GGATTCTGTTACGAATGATGACAACAATAGCTGTCATGAGGCTGCATTCACTTCTACTATGGAA
GAGATGTTTTCTTCTACAGATGCTTATATGCTGATGTACAAACGCATTGCTAAGGATGAGAATG
GTATCGAAAGCAATAATATAAGCAGTAACAATTCGCTCCCACACCATTTTGTGGATGAAATTGA
TGAACGTAATACATCATATGTAAAGGAATGTGAAGAATACGAAAGCAAGAAAGACGTCCATTTG
GCATATATAACAGAGAGGCGCCAAGAAGTAAAATCTGTTCTGACAGAAGCGCCTGCAACTCCAG
AGGAGGATTCTTATTTTTGGATTTCAACAGATTGGCTTCGCCAATGGGCGGACAACGTTAATCC
TCCCTCGTAAGTTTACTTGAGAGCATGTTTGCTTTATTTTATGTAGTCCTTTACAGTGAATTTT
CAACCTTTGTAAATTGTGCTTGCCTCATTACTACATTATGTAGTAGTCTCCGCTACTCTGACCA
TTTTGAACCATTGCACTATCAAATGTTTAACTAGCAGGACCAGTACATTTTGAATCGTTGCACT
GCCATTAGCTTTCATGTCTTGCAGTAACAAGTTCTATATGTCACAGTTCTTCAGTAATATCTTT
TTGGTATCACTTTATGTTTCTGAATCCAAATTTAGACCTATTATAACTGGAGTTCGTGTCCACA
GCTCTATTGACAACAGTCCGATTCAATGTGAACATGGAAAAGTTCCAGCGTCAAAAGTTACATC
CATGAAACGACTATCAGCTGGAGCTTGGCATAAGCTATTTTCTAAAGTAAGAAACTTCTATTTC
TTGGTTTTTATTTCTGAAGAGTAATTTGCCTTAGATTACCTAATTGTAGTGTTTCCTGCCGATT
TTTGAGAAAACTATTTTTGTGCTCAATTCTATGCTTCTGGAATATTTCTGATGAGTTCCTTTCT
TTTTTTTTTTTTGGTACCGTGGTTGCAAAATAATACAAGTATGGAGGGGGGCCAACATTGAGCA
GTGATGATTTTTGCATGGAGTGCCTTAAGGATGGAGCAAAAAATTCAGTATCTGCAGATGTTTA
TCGTGATCGGAAGGCATCATTAAGAAGTATTGCAGAAGCAGCGCTTGCTGGAAATAATCCAGAT
GGTCCTTTGTACTTTGTTTCCAGGCCATGGTAAGAGAATTACATTCAACAATAAGTTGTGGATT
TATTTTTTTATGAAATACTATATGTATTACTATACCTATTACAGTGTGCCACGCCCTAAGATTA
TGTTGTCTTTTAGATGGCAATATAGTGATATGGTCAATCATGTCTTTCTCTACGAGTCATCACA
CCTTAAATATTTATTGCAGCTAATCCATTTGTTCTACTTTGCTCTATTCCATGTATACGCTGGA
ACACTCGCGAAATTTCCATTTAGCCCTTTGGCTAAATAGTCTTTTTTCTTTGTTTGCTCCTAGG
TTGACCCAATGGTTGCGCAGAAAAAATGTGGATATCCCTTCAGATGCTGACAGTGGACCAACAA
TTGCTCTAACGTGCACCCATGGAAATCTTCTTCCGGAACATGCTTCAGGCGCAAAGCGGGTCAC
TGTGCCAGAGGACCTATGGTTATTTCTCTATGAAACCAGTGGAATGAAGATTGATGATATTGTG
ACTTTTCCGTCAGATAGTCAACCATGCGGAATTTGTAGCCAGCAATTATCAGTTGTTGCTTCTG
TTGAGGATAATCTTAGGTTAGATAACAATGCCAGACAATGAATTCCTGCAATCGACTGTTTACT
TAAAGTTCTGGGCTAATATTGACTTTCTTGTGCGTGTTTTGCTACTCAGAGCAGTGAAACTCAA
GCAACGACAAAGCCATGAAAAGTTAACTTCTGGGAAAAGTCTTGCACTTCATCCTGGGCAAAAA
TATTATTTAGTTCCTTCCTCATGGTTGTCAGAGTGGAGAGCTTACATTACAGCGACTGGGAAAA
ATATTTCTTCGTTACCAGAACCTCAATCTCTTGAAGTTACCATCAATTCACTAATCTGTGAAAA
GGTAATACTAACTTTATCTTGGTTCAAAGTCAATGCATGCTATGCACACTCACAGCTACTATGG
TATACATGCTTAATTGATGTAAGAATTCATGGCAAGCTGTTAATTTTGTTTACTTCATCTGGGG
TTCAATGGAATTTTGTGAAAATTTTGTTTGTTTATTGAATGCCTGTTAATTTGATTTTTAACTG
ATTGCTGATGCCTAGTGAGTTGGCGAATCCATTCATTTTTATTTTTATAATTTGCTTGTTGAAT
TTAATGATTGGTAATTTTTCAGCATTCAAGATTGTTGCAAAGGCCCTTGGATCTAGTTTGCAAG
CGTGGGACTATCACTCAGAAAGCATCAAAT
Conservation Information
Conserved circRNAs osi_circ_013991
PMCS 0.162100274
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015