Detail information of Os03g0192800_circ_ig.2


General Information
CircRNA Name Os03g0192800_circ_ig.2
ID in PlantcircBase osa_circ_018329
Alias Os_ciR9070
Organism Oryza sativa
Position chr3: 4840018-4840944  JBrowse»
Reference genome IRGSP-1.0.38
Type   ig-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing Os03g0192800_circ_igg.1 Os03g0192800_circ_ig.1
Support reads 2
Tissues root
Exon boundary   No-No
Splicing signals   GT-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTGAATTTAATGATTGGTAATTTTTCAGCATTCAAGATTGTTGCAAAGGCCCTTGGATCTAGTT
TGCAAGCGTGGGACTATCACTCAGAAAGCATCAAATgttgacccaatggttgcgcagaaaaaat
gtggatatcccttcagatgctgacagtggaccaacaattgctctaacgtgcacccatggaaatc
ttcttccg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTTGACCCAATGGTTGCGCAGAAAAAATGTGGATATCCCTTCAGATGCTGACAGTGGACCAACA
ATTGCTCTAACGTGCACCCATGGAAATCTTCTTCCGGAACATGCTTCAGGCGCAAAGCGGGTCA
CTGTGCCAGAGGACCTATGGTTATTTCTCTATGAAACCAGTGGAATGAAGATTGATGATATTGT
GACTTTTCCGTCAGATAGTCAACCATGCGGAATTTGTAGCCAGCAATTATCAGTTGTTGCTTCT
GTTGAGGATAATCTTAGGTTAGATAACAATGCCAGACAATGAATTCCTGCAATCGACTGTTTAC
TTAAAGTTCTGGGCTAATATTGACTTTCTTGTGCGTGTTTTGCTACTCAGAGCAGTGAAACTCA
AGCAACGACAAAGCCATGAAAAGTTAACTTCTGGGAAAAGTCTTGCACTTCATCCTGGGCAAAA
ATATTATTTAGTTCCTTCCTCATGGTTGTCAGAGTGGAGAGCTTACATTACAGCGACTGGGAAA
AATATTTCTTCGTTACCAGAACCTCAATCTCTTGAAGTTACCATCAATTCACTAATCTGTGAAA
AGGTAATACTAACTTTATCTTGGTTCAAAGTCAATGCATGCTATGCACACTCACAGCTACTATG
GTATACATGCTTAATTGATGTAAGAATTCATGGCAAGCTGTTAATTTTGTTTACTTCATCTGGG
GTTCAATGGAATTTTGTGAAAATTTTGTTTGTTTATTGAATGCCTGTTAATTTGATTTTTAACT
GATTGCTGATGCCTAGTGAGTTGGCGAATCCATTCATTTTTATTTTTATAATTTGCTTGTTGAA
TTTAATGATTGGTAATTTTTCAGCATTCAAGATTGTTGCAAAGGCCCTTGGATCTAGTTTGCAA
GCGTGGGACTATCACTCAGAAAGCATCAAAT
Conservation Information
Conserved circRNAs NA
PMCS 0.161235814
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015