Detail information of Os03g0192800_circ_ig.1


General Information
CircRNA Name Os03g0192800_circ_ig.1
ID in PlantcircBase osa_circ_018328
Alias Os_ciR9069
Organism Oryza sativa
Position chr3: 4838416-4838533  JBrowse»
Reference genome IRGSP-1.0.38
Type   ig-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing Os03g0192800_circ_igg.1 Os03g0192800_circ_ig.2
Support reads 2
Tissues root
Exon boundary   No-No
Splicing signals   GT-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCATCCCTTTGGTGAAAAACCAGGCAAATCATCCGATAAAACTGATCAGAAACCCCAGGgacga
aagcaatggtcaatggtgggagtttgatgatgagcatgtatccaagcttggtct
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GACGAAAGCAATGGTCAATGGTGGGAGTTTGATGATGAGCATGTATCCAAGCTTGGTCTTCATC
CCTTTGGTGAAAAACCAGGCAAATCATCCGATAAAACTGATCAGAAACCCCAGG
Conservation Information
Conserved circRNAs NA
PMCS 0.305787359
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015