Detail information of EPlOSAG00000015207_circ_ig.2


General Information
CircRNA Name EPlOSAG00000015207_circ_ig.2
ID in PlantcircBase osa_circ_000721
Alias Os_ciR2477
Organism Oryza sativa
Position chr1: 5222531-5227043  JBrowse»
Reference genome IRGSP-1.0.38
Type   ig-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing EPlOSAG00000015207_circ_ig.1 EPlOSAG00000015207_circ_ig.3
Support reads 3
Tissues root
Exon boundary   No-No
Splicing signals   GT-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATGTGATGTTTGTTTGTTCGTTTGTTTTTGGAGCAGGGTGTCGGGCGAGGAGCGATTTGTTTTT
GATACTGACTTGCACCAATCTATTTGGAAACAGTAGattctgcagaggttggtgcaatcataaa
tcttgttctggctcttctgattatcctgggttaggttctgtattcaagaacactgccagttaga
gcttagag
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence ATTCTGCAGAGGTTGGTGCAATCATAAATCTTGTTCTGGCTCTTCTGATTATCCTGGGTTAGGT
TCTGTATTCAAGAACACTGCCAGTTAGAGCTTAGAGGGCAAAATTACTTCATTGCAGGTAGGTA
AATGCCTTCATATTCTGCACTGCACATGTTTGTTTGATACTGTAGACATTTCATGAATTAGTAC
TTCATAATTATTATCCAAAAATCTTTAAGTTTCAAGCAATAGAATGTCCTGAATGGTGAGGCTG
TTTCTAATTCTTTTCATTATTGAAATTTTCTTGATGTACTTCTGATATTTTCCATCCTTTTAGG
TTTAAAGGAAAGTAGAAAAGACAGAAAAATGTGCCAGGCCTGACTGAATAGATTCCTGATTTCC
TGTAAACTAAATCACATGGTTAGCCGAAGTGATCTTGATGAGGTAATCTGTATAGTATTTTCTT
TAGTATTCAGTCAGCAAGATCAGTTTATGGGGATGGAACAGTAACACTAGTTCTTGCCCCATTT
GATATAAAGATTGTATTAGTTCATAACTTTGCATGTTAAATAGTTACTGTCTTTCTAAAAGCAG
CATAACTTTGAGAAATCAGAAATGGTATAGATAAATAGCCTTGGAGAGAACATGTTTATCTTGT
TTTTTACTGTACCTCATTATTACTGTACGTAGTAGCTGCTGATAATCACCCAGCCTCACTGATA
AATGCAACCCGACAGGAGCACAATGGTCATACAATCTAGTGGGCCTTTCAGCGTAGTTGGGTGA
TGTCCTGCAAGCAGGGGGGCCATAAGTTGGTCTCTGAAACTATGCCATGAACAGATGGAGATAA
ATGTGGCAATGAACACTAGCAAACGTGGCCTTATTCTAAGAATCGGCTTGCAGGGACCGGTAAC
ACACGGTAACAGTGCAACTGTAGGGGCTATAAAGAGTGAGGGTCCAGTTGCCACCCAATTTCTT
AGTTTTAATAGGTTCTTTTATTGGTTCGGTGATGCAGGCAGTCGATATATTTGTTGTCCACTAA
CTTGCAAGCTTTAATTGCTTTGGTTCATATTAGTTGTTTGTTCATGATTATGGTGTGTGACCTT
AAAGATGCTGCTGTATGAACTAGATCTGTCAAACAGAAGTGTAGGGACTTTCTATACTGTTGTC
ACAGCTCCGTTGTTTGGAAAAATCTATGTTGAGTAGTGCTCTTCCTGTTTTATCTTTTGCTATT
CGATCATATGGCTCTATTCATGATTGACCTGCATGATTTGCCAGGATAAACAAGTGGTACACTG
GTGCATGCATCGTATTTTCTCTTACGTATTTGTATTTTATGTTAATTGAGAATATCTAGCTAGT
TCCTATGCTATGCACTTCTGCATATCACTTGGCTCATTGGCTGTGCAGAGCAATTGTTCATCTT
TTGTCTTTTACCATTGCTCACTGTTGAAGTGTTCCCTCCATCATTTGCAGAGTTCTGTGATAAT
GTGGCGGTCTGCCAGGAGGAACAGGTGTACTGCAATCAGCTGCAGGAACTACCAGCCGATTATT
CTGTAGGCAATAATTCCCAGAACTGAAGCCTGAGCATGCCGAACCTACTGTTTCTCTATAGATC
CCTTGGTAAGTACTATTGTCTGTTGATTCACTCGAACAATAAATTTACCTCAGCCATCCCACAC
TTTTTCCCCACCATTTCTGTTCCGCATAGATTTCACATCCATTATTCAGAGTTGCACAAACCAC
TATCACATATCTTCACCTTTACCGTTCGGGAGCACTCCCATGGTAACAAGAGAATACTCAAGCT
TGGCAGTGCACAATGGTGCAAGACTGCAGGATAATCTGTATACACTCATTCCAAGGACCAAAAG
TGAGCCTGTACTTTTCTTCTGTTACCCCCATACAGGGATCCTTTGCTCCTGGCTTTGTTCAATC
AACTTCCTAGCCCATTCTCCTCCTGTTCATGTGTCTTGCGCCCACACTCGTAAAGCCCTAAACT
GCACTTCGCCAGTGTCCTCGTCAGTCGTCAGCTGCATGCAATAGGAGCACGGGCCCTGGGCAAG
GTCACTATTGAGATCCCTTTTGGCTTGCTGATGGGTACTGCTACCAAGAAATATTGTTCTAACC
TTTGTCCTTGTTGCACTCTTGCCTCATTGATTCCTTTTGTTCCTTCCTTTATGATCCCAATGTG
ATGCTTCTCTGTGCGTACGCTAGGGCCTGCTTTGTTTTTGCATGTGACTTTCCTTCTTTCTTCC
ACTAACACTGCCCAGGATTGAGCACTCGGTCATCATCTAATCGGTATTTCAAGCTTCAAAGTGT
TTTGATGCCTAGCTAGCTTCTTTTGTTTGTTAGGGTTAGGGTGAGAAGAATGTTCGAATGATTG
TGGGGATATAATCAAGCTGCTTTTCCTGTCACCTTAATCATGCAATTTCTGGTAAATCCTAATG
ATTGGTGTCCATCTATCCATGAGTGGGCAGTCTGAGCCACATCCACCCTACCACCCCATATAAG
TGCTAATATGTGCAGGAAACAAAATTTCCTGAATTATTTTCGTGCAATGAGTGATGCATATGTT
GAATTTAAATGCCTAAACTATAATCAATTGTGATATATTTTTCTAAAGAGTTGTTCTTATGCAG
AACTATGGCTCTTCATATCTGTACTCTCAGCAGCCTGCTTCATATTCAGGTCAGGAGTCTTACT
CTCTTTTTTCTCAGTTACAGGTCTTTGTAGTAAAAGTTGCAGGCTCCAATAAAAATGAATTTGT
AGGTAAAACTTTTTTATATGTGTTCTTGGTGACTTAAAAGCCAATGCTAAAAAAGAAACTACAT
TGAAAATATCTCAAAATTAAATTTGAAAATTTAAATTTTGGCTTATTCTTTGGCTGTTTAGGCC
ATCCGATGGGAGCCTGCATCTTACTTTTTTCCATAGATAAATCAGCTAGAAAGAATATTGCTTT
GAAGAGTTTTTTTACCTTACCGACCGGTCTAATTATCACATCATATTAATACCCAAAGATGCAA
CCAACAACTCACGGCATTTCTTTCAAAGGGATTTTAATAAAACCATGGCAATTCCAGCTAATAC
ACGAAATGCTTTCCCTTTTGCTGCCTTTGCTCTTTCACCGTTGTTGTTAAGTGTAAGGCTCTTT
CACTTAGGAGTCCTAGTTCAAGCTAAAGGCTTTTGAAAAGGAAAGGGGGAGCTCTAGTATGCCA
CTAAGGCCATCCTTGCACTTGGCTCATCACTTGGTGCCTTACAACATAATCAAAAGCTCCGATC
CTTGCGACCTCCTATTGGACCTAAAAGGCTAAAACCATGAATGTTCTCCCGTGTTTGTTAATCA
AATCACTGGTCCAAAGCTAGAGTAGAAAATTCCCGCGCATGAGGGGCACATAAGCATAGGGGAA
AAAGCACCCTTGATCATGACTAAACAAGTGATCAGAGTGTGATGCTAATCATTTTAGTACCGTG
CGGTTTGGGTCCGGCCACATCATTGCCTTATACCAGAGTCTGTTCAAGAACTGATGCAGAGCTG
TCACTTGCATGAATATTATTCCCTAGCTGATCAATGGTTTTGCTCTTCATATCTGTGGGCTGTG
GAACTATGGTTGATATCATAGGTGGCCCTCCAAAATTGCACTGCATTGGCGCCAACTTGGCAGA
TAGTGTATATAAAAGTTACTCCCTCTATCTTAAAATATAATTATCCTAACATTTAAATTTTGTT
TCAAAACATAGGTACTTCTCTGTTTACTCCTTATCTCAATCAATCATAATCATATCTTATTTAA
CATTTTCACATATTTCCTCATTGTAACCAACCATAATTATGTCTCATTTAATTTCAGTTATCTC
CTTAATCCCTATAAAAAACTCTAGAAGTGCTTATATATATTTTAGGATAGAAGGAATATTATGT
AAACGGTTAGTGTGTTCAACATCAATCCTGTGATACAGTATCACTGAAAACTCTGTTGATGGAT
TAGATCACTCTTTACTGATGGCGAAGTGTCGCACGAGCCGAGTGACTGATATTTCCCTGTGGAG
CCTTGTCGGAAGCGAGAGTACCAGTGCTACTAGTGAGTGATGTAACGCGGCATCTCGCATGGTC
CGTAAGTTTGACGGGCGATCGACACGACGCAGCCGGGATTGCGTTTGCATGCCCTTGCAGCCCT
GGAGGAGGGAGTGCGTGTGCGCCGCGGATTGGGCCGGAGCCATTGCGTGGTTTCGTACCAGCGG
CAAAGGAAACGTACCTGACCTGCAGCGACGTACCACGTACCTATCGCTTGCCGTTGCTGCGTGT
CGCTGCTGATCTCTCTCTGATGTTGATGATGATGGTGATGATAATGTTTGTGTTGTTGCTTTGT
TTTTTAATTAATTACTTCTACCTGCGTTTATTCTTTTGGGGTTCGTTTCCGTTCGTGATTGATG
TGATGTTTGTTTGTTCGTTTGTTTTTGGAGCAGGGTGTCGGGCGAGGAGCGATTTGTTTTTGAT
ACTGACTTGCACCAATCTATTTGGAAACAGTAG
Conservation Information
Conserved circRNAs osi_circ_011322
PMCS 0.205332862
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015