Detail information of BGIOSGA002944_circ_igg.2


General Information
CircRNA Name BGIOSGA002944_circ_igg.2
ID in PlantcircBase osi_circ_011322
Alias Chr01:5136054_5140587(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr1: 5620342-5624875  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   igg-circRNA
Identification method CIRI2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing BGIOSGA002944_circ_igg.1 BGIOSGA002944_circ_igg.3 BGIOSGA002944_circ_igg.4
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   GT-TA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATGTGATGTTTGTTTGTTCGTTTGTTTTTGGAGCAGGGTGTCGGGCGAGGAGCGATTTGTTTTT
GATACTGACTTGCACCAATCTATTTGGAAACAGTAGgattctgcagaggttggtgcaatcataa
atcttgttctggctcttctgattatcctgggttaggttctgtattcaagaacactgccagttag
agcttaga
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GATTCTGCAGAGGTTGGTGCAATCATAAATCTTGTTCTGGCTCTTCTGATTATCCTGGGTTAGG
TTCTGTATTCAAGAACACTGCCAGTTAGAGCTTAGAGGGCAAAATTACTTCATTGCAGGTAGGT
AAATGCCTTCATATTCTGCACTGCACATGTTTGTTTGATACTGTAGACATTTCATGAATTAGTA
CTTCATAATTATTATCCAAAAATCTTTAAGTTTCAAGCAATAGAATGTCCTGAATGGTGAGGCT
GTTTCTAATTCTTTTCATTTTTGGAATTTTCTTGATGTACTTCTGATATTTTCCATCCTTTTAG
GTTTAAAGGAAAGTAGAAAAGACAGAAAAATGTGCCAGGCCTGACTGAATAGATTCCTGATTTC
CTCTAAACTAAATCACATGGTTAGCCGAAGTGATCTTGATGAGGTAATCTGTATAGTATTTTCT
TTAGTATTCAGTCAGCAAGATCAGTTTATGGGGATGGAACAGTAACACTAGTTCTTGCCCCATT
TGATATAAAGATTGTATTAGTTCATAACTTTGCATGTTAAATAGTTACTGTCTTTCTAAAAGCA
GCATAACTTTGAGAAATCAGAAATGGTATAGATAAATAGCCTTGGAGAGAACATGTTTATCTTG
TTTTTTACTGTACCTCATTATTACTGTACGTAGTAGCTGCTGATAATCACCCAGCCTCACTGAT
AAATGCAACCCGACAGGAGCACAATGGTCATACAATCTAGTGGGCCTTTCAGCGTAGTTGGGTG
ATGTCCTGCAAGCAGGGGGGCCATAAGTTGGTCTCTGAAACTATGCCATGAACAGATGGAGATA
AATGTGGCAATGAACACTAGCAAACGTGGCCTTATTCTAAGAATCGGCTTGCAGGGACCGGTAA
CACGGTAACAGTGCAACTGTAGGGGCTATAAAGAGTGAGGGTCCAGTTGCCACCCAATTTCTTA
GTTTTAATAGGTTCTTTTATTGGTTCGGTGATGCAGGCAGTCGATATATTTGTTGTCCACTAAC
TTGCAAGCTTTAATTGCTTTGGTTCATATTAGTTGTTTGTTCATGATTATGGTGTGTGACCTTA
AAGATGCTGCTGTATGAACTAGATCTGTCAAACAGAAGTGTAGGGACTTTCTATACTGTTGTCA
CAGCTCCGTTGTTTGGAAAAATCTATGTTGAGTAGTGCTCTTCCTGTTTTATCTTTTGCTATTC
GATCATATGGCTCTATTCATGATTGACCTGCATGATTTGCCAGGATAAACAAGTGGTACACTGG
TGCATGCATCGTATTTTCTCTTACGTATTTGTATTTTATGTTAATTGAGAATATCTAGCTAGTT
CCTATGCTATGCACTTCTGCATATCACTTGGCTCATTGGCTGTGCAGAGCAATTGTTCATCTTT
TGTCTTTTACCATTGCTCACTGTTGAAGTGTTCCCTCCATCATTTGCAGAGTTCTGTGATAATG
TGGCGGTCTGCCAGGAGGAACAGGTGTACTGCAATCAGCTGCAGGAACTACCAGCCGATTATTC
TGTAGGCAATAATTCCCAGAACTGAAGCCTGAGCATGCCGAACCTACTGTTTCTCTATAGATCC
CTTGGTAAGTACTATTGTCTGTTGACTCACTCGAACAATAAATTTACCTCAGCCATCCCACACT
TTTTCCCCACCATTTCTGTTCCGCATAGATTTCACATCCATTATTCAGAGTTGCACAAACCACT
ATCACATATCTTCACCTTTACCGTTCGGGAGCACTCCCATGGTAACAAGAGAATACTCAAGCTT
GGCAGTGCACAATGGTGCAAGACTGCAGGATAATCTGTATACACTCATTCCAAGGACCAAAAGT
GAGCCTGTACTTTTCTTCTGTTACCCCCATACAGGGATCCTTTGCTCCTGGCTTTGTTCAATCA
ACTTCCTAGCCCATTCTCCTCCTGTTCATGTGTCTTGCGCCCACACTCGTAAAGCCCTAAACTG
CACTTCGCCAGTGTCCTCGTCAGTCGTCAGCTGCATGCAATAGGAGCACGGGCCCTGGGCAAGG
TCACTATTGAGATCCCTTTTGGCTTGCTGATGGGTACTGCTACCAAGAAATATTGTTCTAACCT
TTGTCCTTGTTGCACTCTTGCCTCATTGATTCCTTTTGTTCCTTCCTTTATGATCCCAATGTGA
TGCTTCTCTGTGCGTACGCTAGGGCCTGCTTTGTTTTTGCATGTGACTTTCCTGCTTTCTTCCA
CTAACACTGCCCAGGATTGAGCACTCGGTCATCATCTAATCGGTATTTCAAGCTTCAAAGTGTT
TTGATGCCTAGCTAGCTTCTTTTGTTTGTTAGGGTTAGGGTGAGAAGAATGTTCGAATGATTGT
GGGGATATAATCAAGCTGCTTTTCCTGTCACCTTAATCATGCAATTTCTGGTAAATCCTAATGA
TTGGTGTCCATCTATCCATGAGTGGGCAGTCTGAGCCACATCTACCCTACCACCCCATATAAGT
GCTAATATGTGCAGGAAACAAAATTTCCTGAATTATTTTCGTGCAATGAGTGATGCATATGTTG
AATTTAAATGCCTAAACTATAATCAATTGTGATATATTTTTCTAAAGAGTTGTTCTTATGCAGA
ACTATGGCTCTTCATATCTGTACTCTCTCCTCAGCAGCCTGCTTCATATTCAGGTCAGGAGTCT
TACTCTCTTTTTTCTCAGTTATAGGTCTTTGTAGTAAAAGTTGCAGGCCCCAATAAAAATGAAT
TTGTAGGTAAAACTTTTTTATATGTGTTCTTGGTGACTTAAAAGCCAATGCTAAAAAAGAAACT
ACATTGAAAATATCTCAAAATCAATCTCAAAATTAAATTTGAAAATTTAAATTTTGGCTTATTC
TTTGGCTGTTTAGGCCATCCGATGGGAGTCTGCATCTTACTTTTTTCCATAGATAAATCAGCTA
GAAAGAATATTGCTTTGAAGAGTTTTTTTACCTTACCGACCGGTCTAATTATCACATCATATTA
ATACCCAAAGATGCAACCAACAACTCACGGTATTTCTTTCAAAGGGATTTTAATAAAACCATGG
CAATTCCAGCTAATACACGAAATGCTTTCCCTTTTGCTGCCTTTGCTCTTTCACCGTTGTTGTT
AAGTGTAAGGCTCTTTCACTTAGGAGTCCTAGTTCAAGCTTAAGGGCTTTTGAAAAGGAAAGGG
GGAGCTCTAGTATGCCACTAAGGCCATCCTTGCACTTGGCTCATCACTTGGTGCCTTACAACAT
AATCAAAAGCTCCGATCCTTGCGACCTCCTATTGGACCTAAAAGGCTAAAACCATGAATGTTCT
CCCGTGTTTGTTAATCAAATCACTGGTCCAAAGCTAGAGTAGAAAATTCCCGCGCATGAGGGGC
ACATAAGCATAGGGGAAAAAGCACCCTTGATCATGACTAAACAAGTGATCAGAGTGTGATGCTA
ATCATTTTAGTACCGTGCGGTTTGGGTCCGGCCACATCATTGCCTTATACCAGAGTCTGTTCAA
GAACTGATGCAGAGCTGTCACTTGCATGAATATTATTCCCTAGCTGATCAATGGTTTTGCTCTT
CATATCTGTGGGCTGTGGAACTATGGTTGATATCATAGGTGGCCCTCCAAAATTGCACTGCATT
GGCGCCAACTTGGCAGATAGTGTATATAAAAGTTACTCCCTCTATCTTAAAATATAATTATTCC
TAACATTTAAATTTTGTTTCAAAACATAGCTACTTCTCTGTTTACTCCTTATCTCAATCAATCA
TAATCATATCTTATTTAACATTTTCACATATTTCCTCATTGTAACCAACCATAATTATGTCTCA
TTTAATTTCAGTTTTCTCCTTAATCCCTATAAAAAACTTTAGAAGTGCTTATATATATTTTAGG
ATAGAAGGAGTATTATGTAAACGGTTAGTGTGTTCAACATCAATCCTGTGATACAGTATCACTG
AAAACTCTGTTGATGGATTAGATCACTCTTTACTGATGGCGAAGTGTTGCACGAGCCGAGTGAC
TGATATTTCCCTGTGGAGCCTTGTCGGAAGCGAGAGTACCAGTGCTACTAGTGAGTGATGTAAC
GCGGCATCTCGCATGGTCCGTAAGTTTGACGGGCGATCGACACGACGCAGCCGGGATTGCGTTT
GCATGCCCCTGCAGCCCTGGAGGAGGGAGTGCGTGTGCGCCGCGGATTGGGCCGGAGCCATTGC
GTGGTTTCGTACCAGCGGCAAAGGAAACGTACCTGACCTGCAGCGACGTACCACGTACCTATCG
CTTGCCGTTGCTTCGTGTCGCTGCTGATCTCTCTCTGATGTTGATGATGATGATGGTGATGATA
ATGTTTGTGTTGTTGCTTTGTTTTTTAATTAATTACTTCTACCTGCGTTTATTCTTTTGGGGTT
CGTTTCCGTTCGTGATTGATGTGATGTTTGTTTGTTCGTTTGTTTTTGGAGCAGGGTGTCGGGC
GAGGAGCGATTTGTTTTTGATACTGACTTGCACCAATCTATTTGGAAACAGTAG
Conservation Information
Conserved circRNAs osa_circ_000721 osa_circ_000720
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021