Detail information of EPlOSAG00000015207_circ_ig.1


General Information
CircRNA Name EPlOSAG00000015207_circ_ig.1
ID in PlantcircBase osa_circ_000720
Alias Os_ciR6541
Organism Oryza sativa
Position chr1: 5222515-5227043  JBrowse»
Reference genome IRGSP-1.0.38
Type   ig-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing EPlOSAG00000015207_circ_ig.2 EPlOSAG00000015207_circ_ig.3
Support reads 2
Tissues root
Exon boundary   No-No
Splicing signals   GT-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATGTGATGTTTGTTTGTTCGTTTGTTTTTGGAGCAGGGTGTCGGGCGAGGAGCGATTTGTTTTT
GATACTGACTTGCACCAATCTATTTGGAAACAGTAGttaattgtcatggtagattctgcagagg
ttggtgcaatcataaatcttgttctggctcttctgattatcctgggttaggttctgtattcaag
aacactgc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TTAATTGTCATGGTAGATTCTGCAGAGGTTGGTGCAATCATAAATCTTGTTCTGGCTCTTCTGA
TTATCCTGGGTTAGGTTCTGTATTCAAGAACACTGCCAGTTAGAGCTTAGAGGGCAAAATTACT
TCATTGCAGGTAGGTAAATGCCTTCATATTCTGCACTGCACATGTTTGTTTGATACTGTAGACA
TTTCATGAATTAGTACTTCATAATTATTATCCAAAAATCTTTAAGTTTCAAGCAATAGAATGTC
CTGAATGGTGAGGCTGTTTCTAATTCTTTTCATTATTGAAATTTTCTTGATGTACTTCTGATAT
TTTCCATCCTTTTAGGTTTAAAGGAAAGTAGAAAAGACAGAAAAATGTGCCAGGCCTGACTGAA
TAGATTCCTGATTTCCTGTAAACTAAATCACATGGTTAGCCGAAGTGATCTTGATGAGGTAATC
TGTATAGTATTTTCTTTAGTATTCAGTCAGCAAGATCAGTTTATGGGGATGGAACAGTAACACT
AGTTCTTGCCCCATTTGATATAAAGATTGTATTAGTTCATAACTTTGCATGTTAAATAGTTACT
GTCTTTCTAAAAGCAGCATAACTTTGAGAAATCAGAAATGGTATAGATAAATAGCCTTGGAGAG
AACATGTTTATCTTGTTTTTTACTGTACCTCATTATTACTGTACGTAGTAGCTGCTGATAATCA
CCCAGCCTCACTGATAAATGCAACCCGACAGGAGCACAATGGTCATACAATCTAGTGGGCCTTT
CAGCGTAGTTGGGTGATGTCCTGCAAGCAGGGGGGCCATAAGTTGGTCTCTGAAACTATGCCAT
GAACAGATGGAGATAAATGTGGCAATGAACACTAGCAAACGTGGCCTTATTCTAAGAATCGGCT
TGCAGGGACCGGTAACACACGGTAACAGTGCAACTGTAGGGGCTATAAAGAGTGAGGGTCCAGT
TGCCACCCAATTTCTTAGTTTTAATAGGTTCTTTTATTGGTTCGGTGATGCAGGCAGTCGATAT
ATTTGTTGTCCACTAACTTGCAAGCTTTAATTGCTTTGGTTCATATTAGTTGTTTGTTCATGAT
TATGGTGTGTGACCTTAAAGATGCTGCTGTATGAACTAGATCTGTCAAACAGAAGTGTAGGGAC
TTTCTATACTGTTGTCACAGCTCCGTTGTTTGGAAAAATCTATGTTGAGTAGTGCTCTTCCTGT
TTTATCTTTTGCTATTCGATCATATGGCTCTATTCATGATTGACCTGCATGATTTGCCAGGATA
AACAAGTGGTACACTGGTGCATGCATCGTATTTTCTCTTACGTATTTGTATTTTATGTTAATTG
AGAATATCTAGCTAGTTCCTATGCTATGCACTTCTGCATATCACTTGGCTCATTGGCTGTGCAG
AGCAATTGTTCATCTTTTGTCTTTTACCATTGCTCACTGTTGAAGTGTTCCCTCCATCATTTGC
AGAGTTCTGTGATAATGTGGCGGTCTGCCAGGAGGAACAGGTGTACTGCAATCAGCTGCAGGAA
CTACCAGCCGATTATTCTGTAGGCAATAATTCCCAGAACTGAAGCCTGAGCATGCCGAACCTAC
TGTTTCTCTATAGATCCCTTGGTAAGTACTATTGTCTGTTGATTCACTCGAACAATAAATTTAC
CTCAGCCATCCCACACTTTTTCCCCACCATTTCTGTTCCGCATAGATTTCACATCCATTATTCA
GAGTTGCACAAACCACTATCACATATCTTCACCTTTACCGTTCGGGAGCACTCCCATGGTAACA
AGAGAATACTCAAGCTTGGCAGTGCACAATGGTGCAAGACTGCAGGATAATCTGTATACACTCA
TTCCAAGGACCAAAAGTGAGCCTGTACTTTTCTTCTGTTACCCCCATACAGGGATCCTTTGCTC
CTGGCTTTGTTCAATCAACTTCCTAGCCCATTCTCCTCCTGTTCATGTGTCTTGCGCCCACACT
CGTAAAGCCCTAAACTGCACTTCGCCAGTGTCCTCGTCAGTCGTCAGCTGCATGCAATAGGAGC
ACGGGCCCTGGGCAAGGTCACTATTGAGATCCCTTTTGGCTTGCTGATGGGTACTGCTACCAAG
AAATATTGTTCTAACCTTTGTCCTTGTTGCACTCTTGCCTCATTGATTCCTTTTGTTCCTTCCT
TTATGATCCCAATGTGATGCTTCTCTGTGCGTACGCTAGGGCCTGCTTTGTTTTTGCATGTGAC
TTTCCTTCTTTCTTCCACTAACACTGCCCAGGATTGAGCACTCGGTCATCATCTAATCGGTATT
TCAAGCTTCAAAGTGTTTTGATGCCTAGCTAGCTTCTTTTGTTTGTTAGGGTTAGGGTGAGAAG
AATGTTCGAATGATTGTGGGGATATAATCAAGCTGCTTTTCCTGTCACCTTAATCATGCAATTT
CTGGTAAATCCTAATGATTGGTGTCCATCTATCCATGAGTGGGCAGTCTGAGCCACATCCACCC
TACCACCCCATATAAGTGCTAATATGTGCAGGAAACAAAATTTCCTGAATTATTTTCGTGCAAT
GAGTGATGCATATGTTGAATTTAAATGCCTAAACTATAATCAATTGTGATATATTTTTCTAAAG
AGTTGTTCTTATGCAGAACTATGGCTCTTCATATCTGTACTCTCAGCAGCCTGCTTCATATTCA
GGTCAGGAGTCTTACTCTCTTTTTTCTCAGTTACAGGTCTTTGTAGTAAAAGTTGCAGGCTCCA
ATAAAAATGAATTTGTAGGTAAAACTTTTTTATATGTGTTCTTGGTGACTTAAAAGCCAATGCT
AAAAAAGAAACTACATTGAAAATATCTCAAAATTAAATTTGAAAATTTAAATTTTGGCTTATTC
TTTGGCTGTTTAGGCCATCCGATGGGAGCCTGCATCTTACTTTTTTCCATAGATAAATCAGCTA
GAAAGAATATTGCTTTGAAGAGTTTTTTTACCTTACCGACCGGTCTAATTATCACATCATATTA
ATACCCAAAGATGCAACCAACAACTCACGGCATTTCTTTCAAAGGGATTTTAATAAAACCATGG
CAATTCCAGCTAATACACGAAATGCTTTCCCTTTTGCTGCCTTTGCTCTTTCACCGTTGTTGTT
AAGTGTAAGGCTCTTTCACTTAGGAGTCCTAGTTCAAGCTAAAGGCTTTTGAAAAGGAAAGGGG
GAGCTCTAGTATGCCACTAAGGCCATCCTTGCACTTGGCTCATCACTTGGTGCCTTACAACATA
ATCAAAAGCTCCGATCCTTGCGACCTCCTATTGGACCTAAAAGGCTAAAACCATGAATGTTCTC
CCGTGTTTGTTAATCAAATCACTGGTCCAAAGCTAGAGTAGAAAATTCCCGCGCATGAGGGGCA
CATAAGCATAGGGGAAAAAGCACCCTTGATCATGACTAAACAAGTGATCAGAGTGTGATGCTAA
TCATTTTAGTACCGTGCGGTTTGGGTCCGGCCACATCATTGCCTTATACCAGAGTCTGTTCAAG
AACTGATGCAGAGCTGTCACTTGCATGAATATTATTCCCTAGCTGATCAATGGTTTTGCTCTTC
ATATCTGTGGGCTGTGGAACTATGGTTGATATCATAGGTGGCCCTCCAAAATTGCACTGCATTG
GCGCCAACTTGGCAGATAGTGTATATAAAAGTTACTCCCTCTATCTTAAAATATAATTATCCTA
ACATTTAAATTTTGTTTCAAAACATAGGTACTTCTCTGTTTACTCCTTATCTCAATCAATCATA
ATCATATCTTATTTAACATTTTCACATATTTCCTCATTGTAACCAACCATAATTATGTCTCATT
TAATTTCAGTTATCTCCTTAATCCCTATAAAAAACTCTAGAAGTGCTTATATATATTTTAGGAT
AGAAGGAATATTATGTAAACGGTTAGTGTGTTCAACATCAATCCTGTGATACAGTATCACTGAA
AACTCTGTTGATGGATTAGATCACTCTTTACTGATGGCGAAGTGTCGCACGAGCCGAGTGACTG
ATATTTCCCTGTGGAGCCTTGTCGGAAGCGAGAGTACCAGTGCTACTAGTGAGTGATGTAACGC
GGCATCTCGCATGGTCCGTAAGTTTGACGGGCGATCGACACGACGCAGCCGGGATTGCGTTTGC
ATGCCCTTGCAGCCCTGGAGGAGGGAGTGCGTGTGCGCCGCGGATTGGGCCGGAGCCATTGCGT
GGTTTCGTACCAGCGGCAAAGGAAACGTACCTGACCTGCAGCGACGTACCACGTACCTATCGCT
TGCCGTTGCTGCGTGTCGCTGCTGATCTCTCTCTGATGTTGATGATGATGGTGATGATAATGTT
TGTGTTGTTGCTTTGTTTTTTAATTAATTACTTCTACCTGCGTTTATTCTTTTGGGGTTCGTTT
CCGTTCGTGATTGATGTGATGTTTGTTTGTTCGTTTGTTTTTGGAGCAGGGTGTCGGGCGAGGA
GCGATTTGTTTTTGATACTGACTTGCACCAATCTATTTGGAAACAGTAG
Conservation Information
Conserved circRNAs osi_circ_011322
PMCS 0.095290471
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015