Detail information of AT2G33210_circ_g.10


General Information
CircRNA Name AT2G33210_circ_g.10
ID in PlantcircBase ath_circ_016239
Alias 2:14077324-14077880
Organism Arabidpsis thaliana
Position chr2: 14077324-14077880  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method find_circ; CIRI2
Parent gene AT2G33210
Parent gene annotation Chaperonin CPN60-like 1, mitochondrial
Parent gene strand -
Alternative splicing AT2G33210_circ_g.1 AT2G33210_circ_g.2 AT2G33210_circ_g.3 AT2G33210_circ_g.4 AT2G33210_circ_g.5 AT2G33210_circ_g.6 AT2G33210_circ_g.7 AT2G33210_circ_g.8 AT2G33210_circ_g.9 AT2G33210_circ_g.11
Support reads 2
Tissues seedling
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered AT2G33210.1:2
AT2G33210.2:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCTTAATTCTATCCTTGAACTCAATGCTCTTGGCAACAGTCACACCATCCTTTGTCACCTTTGG
TGCACCCCAGCTTTGTTCGATGATGACATTACGACCttgaattgtgatcactccctctttgccg
acagtttccatagcctttgcaatcagttcaccaatttccctatctccattagctgatattgttc
caacttgg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TTGAATTGTGATCACTCCCTCTTTGCCGACAGTTTCCATAGCCTTTGCAATCAGTTCACCAATT
TCCCTATCTCCATTAGCTGATATTGTTCCAACTTGGGCGATTTCTTCAGAGGTGCTAATCATGC
GTGCTCGGCTCTGCAAGTTCGTCACAACAGTATCAACTGCCAATTTGATACCACGTCTTAGGTC
CATTGCATTCATTCCAGCGGCAACTGATTTACAACCTTCCGTGAAGATAGCTCTAGTAAGGACT
GTGGCACACGTTGTTCCTGTAACGCATACCATATATTTTGTCAGATACAAAAACACCGATTAAT
ATGAGTAGATAGGAGACTAACAACCCAATTAGCAAAAACAGAAAAAACGTTTTAATCCATTGAA
AGGGAACACTTACCATCACCAGCTACGTCATTTGTGGCGTTAGCAACCTGTTTCACAAGACTGG
CACCAACGTTCTTAATTCTATCCTTGAACTCAATGCTCTTGGCAACAGTCACACCATCCTTTGT
CACCTTTGGTGCACCCCAGCTTTGTTCGATGATGACATTACGACC
Conservation Information
Conserved circRNAs osa_circ_007029
PMCS 0.326509545
Functional Information
Coding potential NA
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Philips et al., 2020