Detail information of Os10g0462900_circ_g.10


General Information
CircRNA Name Os10g0462900_circ_g.10
ID in PlantcircBase osa_circ_007029
Alias Os_ciR6773
Organism Oryza sativa
Position chr10: 17049448-17050543  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method find_circ
Parent gene Os10g0462900
Parent gene annotation Similar to mitochondrial chaperonin-60. (Os10t0462900-01);Simila
r to mitochondrial chaperonin-60. (Os10t0462900-02)
Parent gene strand +
Alternative splicing Os10g0462900_circ_g.1 Os10g0462900_circ_g.2 Os10g0462900_circ_g.3 Os10g0462900_circ_g.4 Os10g0462900_circ_g.5 Os10g0462900_circ_g.6 Os10g0462900_circ_g.7 Os10g0462900_circ_g.8 Os10g0462900_circ_g.9 Os10g0462900_circ_g.11 Os10g0462900_circ_g.12 Os10g0462900_circ_g.13 Os10g0462900_circ_g.14 Os10g0462900_circ_g.15 Os10g0462900_circ_g.16 Os10g0462900_circ_g.17 Os10g0462900_circ_g.18 Os10g0462900_circ_g.19
Support reads 2
Tissues root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os10t0462900-02:3
Os10t0462900-01:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AAAGGTGGGCACAATATCAGCAAATGGGGAAAGGGAAATTGGTGAGCTTATTGCAAAGGCTATG
GAGAAGGTTGGCAAGGAGGGTGTAATCACCATTGCGggacgcaatgtggttattgagcagagct
atggttcaccgaaagtcacaaaggacggtgtgactgttgccaagagcattgagttcaaggatag
agtcaaga
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGACGCAATGTGGTTATTGAGCAGAGCTATGGTTCACCGAAAGTCACAAAGGACGGTGTGACTG
TTGCCAAGAGCATTGAGTTCAAGGATAGAGTCAAGAATGTTGGTGCAAGCCTTGTAAAGCAGGT
TGCTAATGCGACCAATGATACTGCTGGAGATGGTATGGCTGTACTTGTACCATTCTGTTGAGAA
TACTTGGTCCTTCTGTTAGCATTCTACAACTTTGGTTATATATTATAAACAATTCCAGACCATC
TCATGTTTTGCCTTCCTGTAATATTTAACCTGTAACTTATATTTACAAATATGTTCATTATTTG
CATTTTTGCATAAAGTAATTCACTGTATTTAATTTATTGTTGGACGAAGGTTTGAGTGTATGCA
GTTCTTATCTTCATTGTATTCATAGGTGTGAGTTTTGGCATTGTAATTTATTGTTGTTTGGGCA
TTTTCAATCATCTATCAATGCTACCTTGAATTATAATGCTATATAGTACCACTGGTTTTTGATA
GATGTCACGGTTGACTTTTTTATACACAATTTGTTTTGTTAAAAAACGAAAATTATTATTCATT
TTGTTGTGACTTGGTTTATCATCAAAGGTAGTATAAGCATGACTTACATTTTCACATATTTGCA
CAAATTCAATATGTGGATTGCATTGTACTTTAGGATTTGCTTAGTTGCATAATTTGTTTGTTCT
AACTGTGTTATTCTGATCCAAAATTCAGGTACCACTTGTGCTACTGTATTGACTAAAGCAATAT
TTACTGAGGGGTGCAAGTCTGTTGCTGCTGGCATGAATGCAATGGATTTAAGGCGTGGTATTTC
AATGGCTGTTGATGCTGTTGTAACTAACCTAAAGGGCATGGCTAGAATGATCAGCACATCAGAG
GAAATAGCTCAGGTAATACTTGTGATTCATTGCAGATCTCATTATGTGTTTGACTTGTTTCTTA
ATCTTAATCTGTTACTAAGTTCTTATGTTCATATATAAAGGTGGGCACAATATCAGCAAATGGG
GAAAGGGAAATTGGTGAGCTTATTGCAAAGGCTATGGAGAAGGTTGGCAAGGAGGGTGTAATCA
CCATTGCG
Conservation Information
Conserved circRNAs osi_circ_008484 ath_circ_016239
PMCS 0.209680984
Functional Information
Coding potential Y
Potential coding position 17050249-17050540(+)
Potential amino acid sequence MNAMDLRRGISMAVDAVVTNLKGMARMISTSEEIAQVGTISANGEREIGELIAKAMEKVGKEGV
ITIAGRNVVIEQSYGSPKVTKDGVTVAKSIEFKDRVKNVGASLVKQVANATNDTAGDGTTCATV
LTKAIFTEGCKSVAAGMNAMDLRRGISMAVDAVVTNLKGMARMISTSEEIAQVGTISANGEREI
GELIAKAMEKVGKEGVITIAGRNVVIEQSYGSPKVTKDGVTVAKSIEFKDRVKNVGASLVKQVA
NATNDTAGDGTTCATVLTKAIFTEGCKSVAAGMNAMDLRRGISMAVDAVVTNLKGMARMISTSE
EIAQVGTISANGEREIGELIAKAMEKVGKEGVITIAGRNVVIEQSYGSPKVTKDGVTVAKSIEF
KDRVKNVGASLVKQVANATNDTAGDGTTCATVLTKAIFTEGCKSVAAGMNAMDLRRGISMAVDA
VVTNLKGMARMISTSEEIAQVGTISANGEREIGELIAKAMEKVGKEGVITIA(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015