Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Os10g0462900_circ_g.10 |
ID in PlantcircBase | osa_circ_007029 |
Alias | Os_ciR6773 |
Organism | Oryza sativa |
Position | chr10: 17049448-17050543 JBrowse» |
Reference genome | IRGSP-1.0.38 |
Type | e-circRNA |
Identification method | find_circ |
Parent gene | Os10g0462900 |
Parent gene annotation |
Similar to mitochondrial chaperonin-60. (Os10t0462900-01);Simila r to mitochondrial chaperonin-60. (Os10t0462900-02) |
Parent gene strand | + |
Alternative splicing | Os10g0462900_circ_g.1 Os10g0462900_circ_g.2 Os10g0462900_circ_g.3 Os10g0462900_circ_g.4 Os10g0462900_circ_g.5 Os10g0462900_circ_g.6 Os10g0462900_circ_g.7 Os10g0462900_circ_g.8 Os10g0462900_circ_g.9 Os10g0462900_circ_g.11 Os10g0462900_circ_g.12 Os10g0462900_circ_g.13 Os10g0462900_circ_g.14 Os10g0462900_circ_g.15 Os10g0462900_circ_g.16 Os10g0462900_circ_g.17 Os10g0462900_circ_g.18 Os10g0462900_circ_g.19 |
Support reads | 2 |
Tissues | root |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Os10t0462900-02:3 Os10t0462900-01:3 |
Conservation Information | |
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Conserved circRNAs | osi_circ_008484 ath_circ_016239 |
PMCS | 0.209680984 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
17050249-17050540(+) |
Potential amino acid sequence |
MNAMDLRRGISMAVDAVVTNLKGMARMISTSEEIAQVGTISANGEREIGELIAKAMEKVGKEGV ITIAGRNVVIEQSYGSPKVTKDGVTVAKSIEFKDRVKNVGASLVKQVANATNDTAGDGTTCATV LTKAIFTEGCKSVAAGMNAMDLRRGISMAVDAVVTNLKGMARMISTSEEIAQVGTISANGEREI GELIAKAMEKVGKEGVITIAGRNVVIEQSYGSPKVTKDGVTVAKSIEFKDRVKNVGASLVKQVA NATNDTAGDGTTCATVLTKAIFTEGCKSVAAGMNAMDLRRGISMAVDAVVTNLKGMARMISTSE EIAQVGTISANGEREIGELIAKAMEKVGKEGVITIAGRNVVIEQSYGSPKVTKDGVTVAKSIEF KDRVKNVGASLVKQVANATNDTAGDGTTCATVLTKAIFTEGCKSVAAGMNAMDLRRGISMAVDA VVTNLKGMARMISTSEEIAQVGTISANGEREIGELIAKAMEKVGKEGVITIA(+) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Ye et al., 2015 |