Plant Circular RNA Database

Detail information of Os10g0462900_circ_g.10

			
						 General Information
					
						CircRNA Name
						Os10g0462900_circ_g.10
					
						ID in PlantcircBase
						osa_circ_007029
					
						Alias
						Os_ciR6773
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr10: 17049448-17050543  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						find_circ
					
						Parent gene
						
							Os10g0462900						
					
						Parent gene annotation
						
							Similar to mitochondrial chaperonin-60. (Os10t0462900-01);Simila
r to mitochondrial chaperonin-60. (Os10t0462900-02)
							
						Parent gene strand
						+
					
						Alternative splicing
						
							Os10g0462900_circ_g.1 Os10g0462900_circ_g.2 Os10g0462900_circ_g.3 Os10g0462900_circ_g.4 Os10g0462900_circ_g.5 Os10g0462900_circ_g.6 Os10g0462900_circ_g.7 Os10g0462900_circ_g.8 Os10g0462900_circ_g.9 Os10g0462900_circ_g.11 Os10g0462900_circ_g.12 Os10g0462900_circ_g.13 Os10g0462900_circ_g.14 Os10g0462900_circ_g.15 Os10g0462900_circ_g.16 Os10g0462900_circ_g.17 Os10g0462900_circ_g.18 Os10g0462900_circ_g.19 						
					
						Support reads
						2
					
						Tissues
						root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os10t0462900-02:3
Os10t0462900-01:3

General Information
CircRNA Name	Os10g0462900_circ_g.10
ID in PlantcircBase	osa_circ_007029
Alias	Os_ciR6773
Organism	Oryza sativa
Position	chr10: 17049448-17050543 JBrowse»
Reference genome	IRGSP-1.0.38
Type	e-circRNA
Identification method	find_circ
Parent gene	Os10g0462900
Parent gene annotation	Similar to mitochondrial chaperonin-60. (Os10t0462900-01);Simila r to mitochondrial chaperonin-60. (Os10t0462900-02)
Parent gene strand	+
Alternative splicing	Os10g0462900_circ_g.1 Os10g0462900_circ_g.2 Os10g0462900_circ_g.3 Os10g0462900_circ_g.4 Os10g0462900_circ_g.5 Os10g0462900_circ_g.6 Os10g0462900_circ_g.7 Os10g0462900_circ_g.8 Os10g0462900_circ_g.9 Os10g0462900_circ_g.11 Os10g0462900_circ_g.12 Os10g0462900_circ_g.13 Os10g0462900_circ_g.14 Os10g0462900_circ_g.15 Os10g0462900_circ_g.16 Os10g0462900_circ_g.17 Os10g0462900_circ_g.18 Os10g0462900_circ_g.19
Support reads	2
Tissues	root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os10t0462900-02:3 Os10t0462900-01:3

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
						 Sequences
					
						Splice junction sequence  
						
							AAAGGTGGGCACAATATCAGCAAATGGGGAAAGGGAAATTGGTGAGCTTATTGCAAAGGCTATG
GAGAAGGTTGGCAAGGAGGGTGTAATCACCATTGCGggacgcaatgtggttattgagcagagct
atggttcaccgaaagtcacaaaggacggtgtgactgttgccaagagcattgagttcaaggatag
agtcaaga

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

						Full-length trsnacripts
						
							NA						
					
						Genomic sequence
						
							GGACGCAATGTGGTTATTGAGCAGAGCTATGGTTCACCGAAAGTCACAAAGGACGGTGTGACTG
TTGCCAAGAGCATTGAGTTCAAGGATAGAGTCAAGAATGTTGGTGCAAGCCTTGTAAAGCAGGT
TGCTAATGCGACCAATGATACTGCTGGAGATGGTATGGCTGTACTTGTACCATTCTGTTGAGAA
TACTTGGTCCTTCTGTTAGCATTCTACAACTTTGGTTATATATTATAAACAATTCCAGACCATC
TCATGTTTTGCCTTCCTGTAATATTTAACCTGTAACTTATATTTACAAATATGTTCATTATTTG
CATTTTTGCATAAAGTAATTCACTGTATTTAATTTATTGTTGGACGAAGGTTTGAGTGTATGCA
GTTCTTATCTTCATTGTATTCATAGGTGTGAGTTTTGGCATTGTAATTTATTGTTGTTTGGGCA
TTTTCAATCATCTATCAATGCTACCTTGAATTATAATGCTATATAGTACCACTGGTTTTTGATA
GATGTCACGGTTGACTTTTTTATACACAATTTGTTTTGTTAAAAAACGAAAATTATTATTCATT
TTGTTGTGACTTGGTTTATCATCAAAGGTAGTATAAGCATGACTTACATTTTCACATATTTGCA
CAAATTCAATATGTGGATTGCATTGTACTTTAGGATTTGCTTAGTTGCATAATTTGTTTGTTCT
AACTGTGTTATTCTGATCCAAAATTCAGGTACCACTTGTGCTACTGTATTGACTAAAGCAATAT
TTACTGAGGGGTGCAAGTCTGTTGCTGCTGGCATGAATGCAATGGATTTAAGGCGTGGTATTTC
AATGGCTGTTGATGCTGTTGTAACTAACCTAAAGGGCATGGCTAGAATGATCAGCACATCAGAG
GAAATAGCTCAGGTAATACTTGTGATTCATTGCAGATCTCATTATGTGTTTGACTTGTTTCTTA
ATCTTAATCTGTTACTAAGTTCTTATGTTCATATATAAAGGTGGGCACAATATCAGCAAATGGG
GAAAGGGAAATTGGTGAGCTTATTGCAAAGGCTATGGAGAAGGTTGGCAAGGAGGGTGTAATCA
CCATTGCG

Sequences
Splice junction sequence	AAAGGTGGGCACAATATCAGCAAATGGGGAAAGGGAAATTGGTGAGCTTATTGCAAAGGCTATG GAGAAGGTTGGCAAGGAGGGTGTAATCACCATTGCGggacgcaatgtggttattgagcagagct atggttcaccgaaagtcacaaaggacggtgtgactgttgccaagagcattgagttcaaggatag agtcaaga
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	GGACGCAATGTGGTTATTGAGCAGAGCTATGGTTCACCGAAAGTCACAAAGGACGGTGTGACTG TTGCCAAGAGCATTGAGTTCAAGGATAGAGTCAAGAATGTTGGTGCAAGCCTTGTAAAGCAGGT TGCTAATGCGACCAATGATACTGCTGGAGATGGTATGGCTGTACTTGTACCATTCTGTTGAGAA TACTTGGTCCTTCTGTTAGCATTCTACAACTTTGGTTATATATTATAAACAATTCCAGACCATC TCATGTTTTGCCTTCCTGTAATATTTAACCTGTAACTTATATTTACAAATATGTTCATTATTTG CATTTTTGCATAAAGTAATTCACTGTATTTAATTTATTGTTGGACGAAGGTTTGAGTGTATGCA GTTCTTATCTTCATTGTATTCATAGGTGTGAGTTTTGGCATTGTAATTTATTGTTGTTTGGGCA TTTTCAATCATCTATCAATGCTACCTTGAATTATAATGCTATATAGTACCACTGGTTTTTGATA GATGTCACGGTTGACTTTTTTATACACAATTTGTTTTGTTAAAAAACGAAAATTATTATTCATT TTGTTGTGACTTGGTTTATCATCAAAGGTAGTATAAGCATGACTTACATTTTCACATATTTGCA CAAATTCAATATGTGGATTGCATTGTACTTTAGGATTTGCTTAGTTGCATAATTTGTTTGTTCT AACTGTGTTATTCTGATCCAAAATTCAGGTACCACTTGTGCTACTGTATTGACTAAAGCAATAT TTACTGAGGGGTGCAAGTCTGTTGCTGCTGGCATGAATGCAATGGATTTAAGGCGTGGTATTTC AATGGCTGTTGATGCTGTTGTAACTAACCTAAAGGGCATGGCTAGAATGATCAGCACATCAGAG GAAATAGCTCAGGTAATACTTGTGATTCATTGCAGATCTCATTATGTGTTTGACTTGTTTCTTA ATCTTAATCTGTTACTAAGTTCTTATGTTCATATATAAAGGTGGGCACAATATCAGCAAATGGG GAAAGGGAAATTGGTGAGCTTATTGCAAAGGCTATGGAGAAGGTTGGCAAGGAGGGTGTAATCA CCATTGCG

			
						 Conservation Information
					
						Conserved circRNAs
						
							osi_circ_008484 ath_circ_016239 						
					
						PMCS
						0.209680984

Conservation Information
Conserved circRNAs	osi_circ_008484 ath_circ_016239
PMCS	0.209680984

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							17050249-17050540(+)
						
						Potential amino acid sequence
						
							MNAMDLRRGISMAVDAVVTNLKGMARMISTSEEIAQVGTISANGEREIGELIAKAMEKVGKEGV
ITIAGRNVVIEQSYGSPKVTKDGVTVAKSIEFKDRVKNVGASLVKQVANATNDTAGDGTTCATV
LTKAIFTEGCKSVAAGMNAMDLRRGISMAVDAVVTNLKGMARMISTSEEIAQVGTISANGEREI
GELIAKAMEKVGKEGVITIAGRNVVIEQSYGSPKVTKDGVTVAKSIEFKDRVKNVGASLVKQVA
NATNDTAGDGTTCATVLTKAIFTEGCKSVAAGMNAMDLRRGISMAVDAVVTNLKGMARMISTSE
EIAQVGTISANGEREIGELIAKAMEKVGKEGVITIAGRNVVIEQSYGSPKVTKDGVTVAKSIEF
KDRVKNVGASLVKQVANATNDTAGDGTTCATVLTKAIFTEGCKSVAAGMNAMDLRRGISMAVDA
VVTNLKGMARMISTSEEIAQVGTISANGEREIGELIAKAMEKVGKEGVITIA(+)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	17050249-17050540(+)
Potential amino acid sequence	MNAMDLRRGISMAVDAVVTNLKGMARMISTSEEIAQVGTISANGEREIGELIAKAMEKVGKEGV ITIAGRNVVIEQSYGSPKVTKDGVTVAKSIEFKDRVKNVGASLVKQVANATNDTAGDGTTCATV LTKAIFTEGCKSVAAGMNAMDLRRGISMAVDAVVTNLKGMARMISTSEEIAQVGTISANGEREI GELIAKAMEKVGKEGVITIAGRNVVIEQSYGSPKVTKDGVTVAKSIEFKDRVKNVGASLVKQVA NATNDTAGDGTTCATVLTKAIFTEGCKSVAAGMNAMDLRRGISMAVDAVVTNLKGMARMISTSE EIAQVGTISANGEREIGELIAKAMEKVGKEGVITIAGRNVVIEQSYGSPKVTKDGVTVAKSIEF KDRVKNVGASLVKQVANATNDTAGDGTTCATVLTKAIFTEGCKSVAAGMNAMDLRRGISMAVDA VVTNLKGMARMISTSEEIAQVGTISANGEREIGELIAKAMEKVGKEGVITIA(+)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Ye et al., 2015

circRNA

Detail information of Os10g0462900_circ_g.10

Address

Any questions?

Supported by