Detail information of Os03g0251500_circ_g.3


General Information
CircRNA Name Os03g0251500_circ_g.3
ID in PlantcircBase osa_circ_018877
Alias NA
Organism Oryza sativa
Position chr3: 7985284-7987199  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os03g0251500
Parent gene annotation Similar to T-cell immune regulator 1 transcript variant 3 (Fragm
ent). (Os03t0251500-01)
Parent gene strand +
Alternative splicing Os03g0251500_circ_g.2
Support reads 1
Tissues root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os03t0251500-01:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTTCTTATTTGCTGTCATGTTTGGAGATTGGGGACATGGAATTTGCATATTGGTTTCGACACTC
TATCTGATAATCCGAGAGAAGAAATTTGCTTCACAGgttgccaaaaatgcatttgttattttct
actctggggatagagcaaaagccaaaattctgaagatatgtgatgcgttcaacgcaaatcgcta
cccatttc
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 657
Transcript exons: 7985284-7985421,7985873-7985980,7986096-7986203,7986316-
7986464,7987046-7987199
GTTGCCAAAAATGCATTTGTTATTTTCTACTCTGGGGATAGAGCAAAAGCCAAAATTCTGAAGA
TATGTGATGCGTTCAACGCAAATCGCTACCCATTTCCAGAAGATGTTGCTAGACAATTACATGC
TGTTCAGGAGGTATCTGCAAAGATATCAGAGTTAAAGGCAACAATTGACATGGGATTAGCACAT
CGTGACAATATATTGAAAAATATCGCGTCTGAGTTTGAGAATTGGAACCGTCTGGCAAATAAGG
AAAAAATAATTTACCACACTTTGAACATGTTGAGTGTTGATGTGACAAAGAAATGCTTAGTTGG
TGAGGGCTGGAGTCCAGTTTTTGCAACAACTCAGATCCAAGATGCGCTCCAGCGAGCTACTCTT
GATAGCAAATCCCAAGTTGGTTCAATTTTTCAAGTTCTCAACACAACAGAATCTCCCCCGACAT
ATTTCCAGACAAATAAGTTCACTTCGGCTTTCCAGGAAATTGTTGATGCATACGGGATAGCCAA
ATATCAAGAAGCAAACCCTGGTGTATTCACTATTGTCACTTTTCCTTTCTTATTTGCTGTCATG
TTTGGAGATTGGGGACATGGAATTTGCATATTGGTTTCGACACTCTATCTGATAATCCGAGAGA
AGAAATTTGCTTCACAG

Genomic sequence GTTGCCAAAAATGCATTTGTTATTTTCTACTCTGGGGATAGAGCAAAAGCCAAAATTCTGAAGA
TATGTGATGCGTTCAACGCAAATCGCTACCCATTTCCAGAAGATGTTGCTAGACAATTACATGC
TGTTCAGGAGGTCAGGTCTTGGAAATGTGATTTGTTAATATTCTTTGATGAAATTCTTTCTAGT
ATTTCGAAATTTAGATATAGTCCTGAATTGCTTTCAGAAGGTAGTGAGGATGCCAACCGTTGAG
AGAATCATCTGCACGAGTTGCCCTTTATGGACATTCTTGTGCTTTGCTTGTGATATGTCCAATG
TTACCATCCCTATTCTGATGTCACTGCTGTCATTTCAATTTCGAATTTGAAAAATGTTAATTAA
TTATTATAGATTTATAATAGCTAGACTTTGTTCTGTGCCTTCCAATCATTACTTTTGCTGTTGG
TGACTAATGAAAATGATTTGCTGCTATTGCATCTTGTTTGCACCATAAGGAGATATGTCATTGG
GAGAAACTTGTTTTGCAGTTGTACTACTATGAATTTCAGTCAATAAACATATAAAGTCTATGCT
TATGAATTTACAGGTATCTGCAAAGATATCAGAGTTAAAGGCAACAATTGACATGGGATTAGCA
CATCGTGACAATATATTGAAAAATATCGCGTCTGAGTTTGAGAATTGGAACCGTCTGGTAAGCT
ATCCTCTTATGTGATAAATTCCATATGTTAGAAAATTCCGAAATCCACCAGTCAGGTCATTATT
TCAGTTCTATATATATGATACTAATTAGCATACAAATGCTCCAGGCAAATAAGGAAAAAATAAT
TTACCACACTTTGAACATGTTGAGTGTTGATGTGACAAAGAAATGCTTAGTTGGTGAGGGCTGG
AGTCCAGTTTTTGCAACAACTCAGGTAATTGATACACCACCCTGGTGCTAACAATTTATTAGCC
TACTGTTTCCATTTGTTTATTTGGGAGATTATTCTTCATGTGATCTCAATGATTTACAACTTTA
TTTTGCAGATCCAAGATGCGCTCCAGCGAGCTACTCTTGATAGCAAATCCCAAGTTGGTTCAAT
TTTTCAAGTTCTCAACACAACAGAATCTCCCCCGACATATTTCCAGACAAATAAGTTCACTTCG
GCTTTCCAGGAAATTGTTGATGCATACGGGTATGTTTCAGAGGGCTCTGAGATGCTACTTTTGG
TTTCTCTTTTGGCTTTGGAACTGAAAATAATATATTTTCTTGTGGGTTGTTCCAAGTTGTTTAT
AGCACCATGGGATATGAGACTTCTATTATTGTCCCCCCGCTTTTGGTTTCATCTCAGAAATGAT
GCTCTTTTCACCATTCTTTTGCTGGACTCACTATTTTCATGTGAAATCGACAAACTTTTGGTTC
GCTTAAAGAAAAGAAAGGAAAATTGCCATAATTCACTGTTCCTCTTCAATAGGCAAAGACATGC
CATCATTCCCTGTTATTTGCTCCTCAATTGTGCATTCTAAGTGAAACATTTCCTTTTTTGTTTC
CCTTTTGTGGACATGTCTACCACGTTGAAATCATTGTGTTCATATTGTCAAAGAAGCACTTAAA
CTTGCAATAGGAATTTCCAGAATTTTTGTGCTTATGGGAAATATATTATTTTATCTGAATAAAA
TTAGCATTGACTCCTGAAAAATCAATAAAGAGCTTGCTGTTTGTTTGGGCCAAATGGTTTAGTT
AGGAACTGCTAACTTTGTATTACATCTGATACAGGATAGCCAAATATCAAGAAGCAAACCCTGG
TGTATTCACTATTGTCACTTTTCCTTTCTTATTTGCTGTCATGTTTGGAGATTGGGGACATGGA
ATTTGCATATTGGTTTCGACACTCTATCTGATAATCCGAGAGAAGAAATTTGCTTCACAG
Conservation Information
Conserved circRNAs osi_circ_004679* osi_circ_014135
PMCS 0.450814403
Functional Information
Coding potential Y
Potential coding position 7985913-7987196(+)
7985301-7987116(-)
Potential amino acid sequence MGLAHRDNILKNIASEFENWNRLANKEKIIYHTLNMLSVDVTKKCLVGEGWSPVFATTQIQDAL
QRATLDSKSQVGSIFQVLNTTESPPTYFQTNKFTSAFQEIVDAYGIAKYQEANPGVFTIVTFPF
LFAVMFGDWGHGICILVSTLYLIIREKKFASQVAKNAFVIFYSGDRAKAKILKICDAFNANRYP
FPEDVARQLHAVQEVSAKISELKATIDMGLAHRDNILKNIASEFENWNRLANKEKIIYHTLNML
SVDVTKKCLVGEGWSPVFATTQIQDALQRATLDSKSQVGSIFQVLNTTESPPTYFQTNKFTSAF
QEIVDAYGIAKYQEANPGVFTIVTFPFLFAVMFGDWGHGICILVSTLYLIIREKKFASQVAKNA
FVIFYSGDRAKAKILKICDAFNANRYPFPEDVARQLHAVQEVSAKISELKATIDMGLAHRDNIL
KNIASEFENWNRLANKEKIIYHTLNMLSVDVTKKCLVGEGWSPVFATTQIQDALQRATLDSKSQ
VGSIFQVLNTTESPPTYFQTNKFTSAFQEIVDAYGIAKYQEANPGVFTIVTFPFLFAVMFGDWG
HGICILVSTLYLIIREKKFASQVAKNAFVIFYSGDRAKAKILKICDAFNANRYPFPEDVARQLH
AVQEVSAKISELKATIDMGLAHRDNILKNIASEFENWNRLANKEKIIYHTLNMLSVDVTKKCLV
GEGWSPVFATTQIQDALQRATLDSKSQVGSIFQVLNTTESPPTYFQTNKFTSAFQEIVDAYGIA
KYQEANPGVFTIVTFPFLFAVMFGDWGHGICILVSTLYLIIREKKFASQ(+)
MHFWQPVKQISSLGLSDRVSKPICKFHVPNLQT*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017