Detail information of BGIOSGA013864_circ_g.9


General Information
CircRNA Name BGIOSGA013864_circ_g.9
ID in PlantcircBase osi_circ_005229
Alias 3:39183355|39184630
Organism Oryza sativa ssp. indica
Position chr3: 39183355-39184630  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA013864
Parent gene annotation NA
Parent gene strand +
Alternative splicing BGIOSGA013864_circ_g.1 BGIOSGA013864_circ_g.2 BGIOSGA013864_circ_g.3 BGIOSGA013864_circ_g.4 BGIOSGA013864_circ_g.5 BGIOSGA013864_circ_g.6 BGIOSGA013864_circ_g.7 BGIOSGA013864_circ_g.8
Support reads NA
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered BGIOSGA013864-TA:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCAGGTTCAAGGTGCAGTTTTCGATTTACCTGAGGAGATTGCGAGGGATTTGCTTAGTATGGAA
CTGCCCCCAGGAAACACCATAACCAAAGTGACAAAGattatccattatgaattgcccaatgatc
cagagacttttgttcatcgttctggacgcactggccgagctgggaaagcaggaactgcaatctt
gatgttca
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence ATTATCCATTATGAATTGCCCAATGATCCAGAGACTTTTGTTCATCGTTCTGGACGCACTGGCC
GAGCTGGGAAAGCAGGAACTGCAATCTTGATGTTCACAAACAGCCAGAGAAGGACAGTTAGATC
ACTTGAGCGTGATGTTGGATGCAGATTTGACTTCATAAGTCCTCCAGCAATTGAGGATGTGCTG
GAGTCCTCTGCTGAACATGTCATAGCTACTTTAAGAGGTGTGCACACGGAGTCGATTCAGTACT
TCATTCCAGCAGCTGAAAGACTGCAAGAAGAATTAGGACCTAATGCTCTTGCTTCTGCATTGGC
ACATCTGAGTGGATTTTCTCAGCCACCCTCTTCACGTTCTCTTATCAGTCATGAGCAGGTAAGA
ATTAATAAGTGACCCGAGGAAATTACATGTATCCATCATTAACTGATATTCTACTATTTCTACC
ATTGTATCGAACACTTCCTTTTTCCCTACCTTAGTTATAGCTACCCATCAACTTCATCCAGCTG
TCCTGATTTATGCCTTCTACATTTGAGGATTTATATCCACCTAATTTTATATGAATACAATGGG
CTACTAGTACTGATTACTGAAATTGCATCTTTTATAAATTTATAATGGGCAATCAAATAATTGT
ATAGAAAAGCTCCACTTTTTTTTTTGAGTTGCTCAAAGTTTTGTTGTGCGTTTACCGTTTATCT
TTTCTTTTTAAAGCTAGAAGCACTCATATGATTTCTTACCCTCTATTAAAACACAGGGATGGGT
GACTTTGCAACTAACTAGAGATCCAGGATATGGAAGGGGGTTCTTTTCTCCTAGATCTGTTACT
GGCTTTCTGTCTGATGTTTCTTCAGCTGCTGCTGATGAAGTTGGCAAAATTTTCCTTACAGCAG
ATGAGAAGGTGAGCTCTTGCTTGAGCATGTCGATCATTAATTTCTGTGCATGAGTGCATTGGGT
CTATGAGCAATTGAGCATGCAGTTTTGAAGCTGTTGGCTGATACTAGTTTTGCAGCATATATAT
CTTCTTTAATTAATGTGCATTACATGCAATAGTATGCATTGCAGAAATCGATGACACATATCAC
TACTTTTTCATGCATATCTTCAAAACTCCTGCATTTATGTGTATGACTTTCACTGTGATGCTCA
TGCATTGGCGCATTGTTGGTTGTGTCAGGTTCAAGGTGCAGTTTTCGATTTACCTGAGGAGATT
GCGAGGGATTTGCTTAGTATGGAACTGCCCCCAGGAAACACCATAACCAAAGTGACAAAG
Conservation Information
Conserved circRNAs osa_circ_022545*
PMCS
Functional Information
Coding potential Y
Potential coding position 39183401-39184558(-)
39183449-39184627(+)
Potential amino acid sequence MNKSLWIIGQFIMDNLCHFGYGVSWGQFHTKQIPRNLLR*(-)
MFTNSQRRTVRSLERDVGCRFDFISPPAIEDVLESSAEHVIATLRGVHTESIQYFIPAAERLQE
ELGPNALASALAHLSGFSQPPSSRSLISHEQGWVTLQLTRDPGYGRGFFSPRSVTGFLSDVSSA
AADEVGKIFLTADEKVQGAVFDLPEEIARDLLSMELPPGNTITKVTKIIHYELPNDPETFVHRS
GRTGRAGKAGTAILMFTNSQRRTVRSLERDVGCRFDFISPPAIEDVLESSAEHVIATLRGVHTE
SIQYFIPAAERLQEELGPNALASALAHLSGFSQPPSSRSLISHEQGWVTLQLTRDPGYGRGFFS
PRSVTGFLSDVSSAAADEVGKIFLTADEKVQGAVFDLPEEIARDLLSMELPPGNTITKVTKIIH
YELPNDPETFVHRSGRTGRAGKAGTAILMFTNSQRRTVRSLERDVGCRFDFISPPAIEDVLESS
AEHVIATLRGVHTESIQYFIPAAERLQEELGPNALASALAHLSGFSQPPSSRSLISHEQGWVTL
QLTRDPGYGRGFFSPRSVTGFLSDVSSAAADEVGKIFLTADEKVQGAVFDLPEEIARDLLSMEL
PPGNTITKVTKIIHYELPNDPETFVHRSGRTGRAGKAGTAILMFTNSQRRTVRSLERDVGCRFD
FISPPAIEDVLESSAEHVIATLRGVHTESIQYFIPAAERLQEELGPNALASALAHLSGFSQPPS
SRSLISHEQGWVTLQLTRDPGYGRGFFSPRSVTGFLSDVSSAAADEVGKIFLTADEKVQGAVFD
LPEEIARDLLSMELPPGNTITKVTK(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021