Detail information of Os03g0253800_circ_g.2


General Information
CircRNA Name Os03g0253800_circ_g.2
ID in PlantcircBase osa_circ_018898
Alias NA
Organism Oryza sativa
Position chr3: 8113245-8114601  JBrowse»
Reference genome IRGSP-1.0.38
Type   ue-circRNA
Identification method CIRCexplorer
Parent gene Os03g0253800
Parent gene annotation Mitochondrial import inner membrane translocase, subunit Tim21 d
omain containing protein. (Os03t0253800-01);Conserved hypothetic
al protein. (Os03t0253800-02);Mitochondrial inner membrane trans
locase complex, subunit Tim21 domain containing protein. (Os03t0
253800-03)
Parent gene strand -
Alternative splicing Os03g0253800_circ_g.1 Os03g0253800_circ_g.3
Support reads 4
Tissues root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os03t0253800-01:3
Os03t0253800-02:2
Os03t0253800-03:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GACTGTAGGAAGCCCCTTCAGCAAATGTCACTGGCTTCTCAGGTATGTTGTAGGTAGGGGAATC
AAATGGATCTTCAACAGTTTTCAGGTCTTTTGTACCctccacatgttcaacaccgtcctcatct
gtccaaaccttgttaggaatgcgctgccgagctgcacgatttctactttcattgccatatccag
taacagga
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 1269
Transcript exons: 8113245-8113364,8113453-8114601
CTCCACATGTTCAACACCGTCCTCATCTGTCCAAACCTTGTTAGGAATGCGCTGCCGAGCTGCA
CGATTTCTACTTTCATTGCCATATCCAGTAACAGGATACCCAATTTTTGCTGTAACCTGACTGT
CATTCTGTACTCTTGCTAGCGCTTTTCCAAAAATCTTGTACCTGTAGAATGGTAACAGCAGTGC
AAGCTCTTTCAAATTGCATATAATAATATATGCATTTAACATAAGAAAAAGATTCGAAGCACAA
AAAGAACTTTCACTAGGAAGTAACAAGAACACCCATGCCAACTTGCTAAGTGACTTGCATAGGA
TCAAATCAGAAATGTGCCATGGCACTCTGCTGCAGCATACAAGAAAAAAAATCCATAGCTTACT
GATTGTTTCTTTAAAGTTTGGCACCGTAAGTGGCTACATGTGAGGGTCATAAACAAACCTAGAA
ACATCTGGATTAATAAATGTGTGTGTGATATTAGTTTTTTAAAAAATAAATAAAAAGGAACTAT
TTCCATATTATACAAAATATTAACGCTACAATGTGAAGAAAGACCATTGCACAGTGCATATTTG
TAGGACTTACCAAATTATCATAACTGGTTAGACTTGAATGTATTTTACTGTCATAAGCCATACA
ATTATGCGAGCAACTATATTATTAAAGTACCTTTGATTTCATTCAAAATGGAGGCTTCCTGAGG
AACTGGTTCATCGTGGAATCTTAAGCCATGTGAAAAATAGGAGAGGCAGGGGTTGGATAAAAAC
TGAAATGGAAGAAAGTGGTAAAAAGACCACTGAAGGCATGGAGTGCATCCAAAGATTTGGGTTT
GGATAGGAGTACGAGGAAGTTGGCGATCCAACATCCAAGTGCCAGAACTACATAAGAATTTACA
TAATTCTTTCACCGGTATCATTCCTAGTAGTATTAGGAATATGTGGAAGTTAGAGATCCAACAT
TTTGGTTCTCCTGGCTATACTTGGGTTTCACCTCTAGTCCACCCAGCTTCCTGGGACTAAAGAT
TGTAGTACTTGTTGTTGAGCTAAGTGCCTAAGTCAAAAGAATTAACAATTAATGCAGAAAACTT
ACTCTTTTGGTTCAAATATAAGTTCTTTGAAAACAGCATATCCAGCCACTGCTGCAATTCCAAG
TCCCGCAACTATTACAAGACTGTAGGAAGCCCCTTCAGCAAATGTCACTGGCTTCTCAGGTATG
TTGTAGGTAGGGGAATCAAATGGATCTTCAACAGTTTTCAGGTCTTTTGTACC

Transcript length: 348
Transcript exons: 8113245-8113364,8113453-8113501,8114423-8114601
CTCCACATGTTCAACACCGTCCTCATCTGTCCAAACCTTGTTAGGAATGCGCTGCCGAGCTGCA
CGATTTCTACTTTCATTGCCATATCCAGTAACAGGATACCCAATTTTTGCTGTAACCTGACTGT
CATTCTGTACTCTTGCTAGCGCTTTTCCAAAAATCTTGTACTCTTTTGGTTCAAATATAAGTTC
TTTGAAAACAGCATATCCAGCCACTGCTGCAATTCCAAGTCCCGCAACTATTACAAGACTGTAG
GAAGCCCCTTCAGCAAATGTCACTGGCTTCTCAGGTATGTTGTAGGTAGGGGAATCAAATGGAT
CTTCAACAGTTTTCAGGTCTTTTGTACC

Genomic sequence CTCCACATGTTCAACACCGTCCTCATCTGTCCAAACCTTGTTAGGAATGCGCTGCCGAGCTGCA
CGATTTCTACTTTCATTGCCATATCCAGTAACAGGATACCCAATTTTTGCTGTAACCTGACAAA
ACGTGTGAAAACATGAAGTTGTACCAAGGGGAAAATATGATATGTATGAAGGAAGTGGAATAGC
ACTAATGTCCACAAACCTGACTGTCATTCTGTACTCTTGCTAGCGCTTTTCCAAAAATCTTGTA
CCTGTAGAATGGTAACAGCAGTGCAAGCTCTTTCAAATTGCATATAATAATATATGCATTTAAC
ATAAGAAAAAGATTCGAAGCACAAAAAGAACTTTCACTAGGAAGTAACAAGAACACCCATGCCA
ACTTGCTAAGTGACTTGCATAGGATCAAATCAGAAATGTGCCATGGCACTCTGCTGCAGCATAC
AAGAAAAAAAATCCATAGCTTACTGATTGTTTCTTTAAAGTTTGGCACCGTAAGTGGCTACATG
TGAGGGTCATAAACAAACCTAGAAACATCTGGATTAATAAATGTGTGTGTGATATTAGTTTTTT
AAAAAATAAATAAAAAGGAACTATTTCCATATTATACAAAATATTAACGCTACAATGTGAAGAA
AGACCATTGCACAGTGCATATTTGTAGGACTTACCAAATTATCATAACTGGTTAGACTTGAATG
TATTTTACTGTCATAAGCCATACAATTATGCGAGCAACTATATTATTAAAGTACCTTTGATTTC
ATTCAAAATGGAGGCTTCCTGAGGAACTGGTTCATCGTGGAATCTTAAGCCATGTGAAAAATAG
GAGAGGCAGGGGTTGGATAAAAACTGAAATGGAAGAAAGTGGTAAAAAGACCACTGAAGGCATG
GAGTGCATCCAAAGATTTGGGTTTGGATAGGAGTACGAGGAAGTTGGCGATCCAACATCCAAGT
GCCAGAACTACATAAGAATTTACATAATTCTTTCACCGGTATCATTCCTAGTAGTATTAGGAAT
ATGTGGAAGTTAGAGATCCAACATTTTGGTTCTCCTGGCTATACTTGGGTTTCACCTCTAGTCC
ACCCAGCTTCCTGGGACTAAAGATTGTAGTACTTGTTGTTGAGCTAAGTGCCTAAGTCAAAAGA
ATTAACAATTAATGCAGAAAACTTACTCTTTTGGTTCAAATATAAGTTCTTTGAAAACAGCATA
TCCAGCCACTGCTGCAATTCCAAGTCCCGCAACTATTACAAGACTGTAGGAAGCCCCTTCAGCA
AATGTCACTGGCTTCTCAGGTATGTTGTAGGTAGGGGAATCAAATGGATCTTCAACAGTTTTCA
GGTCTTTTGTACC
Conservation Information
Conserved circRNAs osi_circ_014139
PMCS 0.247432019
Functional Information
Coding potential Y
Potential coding position 8114569-8113285(+)
8113568-8114421(-)
8113465-8114588(-)
Potential amino acid sequence MDLQQFSGLLYPPHVQHRPHLSKPC*(+)
MLNAYIIICNLKELALLLPFYRYKIFGKALARVQNDSQVTAKIGYPVTGYGNESRNRAARQRIP
NKVWTDEDGVEHVEGTKDLKTVEDPFDSPTYNIPEKPVTFAEGASYSLVIVAGLGIAAVAGYAV
FKELIFEPKE*(-)
MTVRLQQKLGILLLDMAMKVEIVQLGSAFLTRFGQMRTVLNMWRVQKT*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017