Detail information of Os03g0253800_circ_g.1


General Information
CircRNA Name Os03g0253800_circ_g.1
ID in PlantcircBase osa_circ_018897
Alias Os_ciR9179
Organism Oryza sativa
Position chr3: 8112358-8115861  JBrowse»
Reference genome IRGSP-1.0.38
Type   u-circRNA
Identification method find_circ
Parent gene Os03g0253800
Parent gene annotation Mitochondrial import inner membrane translocase, subunit Tim21 d
omain containing protein. (Os03t0253800-01);Conserved hypothetic
al protein. (Os03t0253800-02);Mitochondrial inner membrane trans
locase complex, subunit Tim21 domain containing protein. (Os03t0
253800-03)
Parent gene strand -
Alternative splicing Os03g0253800_circ_g.2 Os03g0253800_circ_g.3
Support reads 2
Tissues root
Exon boundary   No-Yes
Splicing signals   CT-AC
Number of exons covered Os03t0253800-03:5
Os03t0253800-02:4
Os03t0253800-01:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ACTAAATGAGTAGATACTTTGTGGCTTTCACGCTGTGTTGTGAGAGGACTTGAAGGGTTTGACT
TGATCATGTACCACCTTGATTTTTTTAAAGATGAGGcttacaacaattctgccactgctaactg
cttgtttcttgcatccttatgctggtacgtaagattctaacattagttgtacacgatgcggaga
cacaatct
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTACAACAATTCTGCCACTGCTAACTGCTTGTTTCTTGCATCCTTATGCTGGTACGTAAGATT
CTAACATTAGTTGTACACGATGCGGAGACACAATCTCAACAATAAGGTATGTGAACTTCCAACT
CCTGTCATTGTTATCTTTGAACATCTCTGAATACACCTTTCCAGCTCCATGTGGTCCTCGGATA
TAGAAGTTTACCTAAATAAGATGAGTGTGTTTCGAGTGATCAATCAAATTCAACCGTGTGCATA
ACCATGCAAACTATATGTCTTAATATCAAAACCCGTCCTAATGCCCCCTTTCCCAATAAACAAA
GAATTGTATCTTCACAGAATACATGGGACAACTGAGAACATGTTTGCATTAAGCAAGGATAGAC
CATAAAGATTACACCCGACGATCTAGTTGTAACCAAACAACAGTCAAGTGCAAGAGCATACGAA
GACTATTACACAAAGAGCAAAGTATCATCGAGAAGGCCATTACACGATGATATCTACTTCTAAG
TATTATTATTGGCATTGACTCAAACAGTCTTTCTAGTCAAGAAGCTTGTGTGCTCATTTCTCAT
TTCCTCTTGCTATGTTATCATTCACAATCTCCCCTCAGTTAAATGAAGCCATTAGCCCATGCCA
TATAAATATAATAAAATGTCAAGGAGCATGTGTCCATGTCACGCCCAGAAAAACATTTAATTCT
CCCATTATTCCACTTGATTAAATTGATTTATCTTTTATTTAATTTCTAGAAAATGCATTATTAA
ATGTTTTTTTTTTAATCCCGAACGAAAATCGGGGCGTTACAGTCCACACTAAACTTGAGTGGCA
AATAAATCAACATACTTAAAAGAGACAGAACAACAGAGGCAAGAATATATGCTACCTCCACATG
TTCAACACCGTCCTCATCTGTCCAAACCTTGTTAGGAATGCGCTGCCGAGCTGCACGATTTCTA
CTTTCATTGCCATATCCAGTAACAGGATACCCAATTTTTGCTGTAACCTGACAAAACGTGTGAA
AACATGAAGTTGTACCAAGGGGAAAATATGATATGTATGAAGGAAGTGGAATAGCACTAATGTC
CACAAACCTGACTGTCATTCTGTACTCTTGCTAGCGCTTTTCCAAAAATCTTGTACCTGTAGAA
TGGTAACAGCAGTGCAAGCTCTTTCAAATTGCATATAATAATATATGCATTTAACATAAGAAAA
AGATTCGAAGCACAAAAAGAACTTTCACTAGGAAGTAACAAGAACACCCATGCCAACTTGCTAA
GTGACTTGCATAGGATCAAATCAGAAATGTGCCATGGCACTCTGCTGCAGCATACAAGAAAAAA
AATCCATAGCTTACTGATTGTTTCTTTAAAGTTTGGCACCGTAAGTGGCTACATGTGAGGGTCA
TAAACAAACCTAGAAACATCTGGATTAATAAATGTGTGTGTGATATTAGTTTTTTAAAAAATAA
ATAAAAAGGAACTATTTCCATATTATACAAAATATTAACGCTACAATGTGAAGAAAGACCATTG
CACAGTGCATATTTGTAGGACTTACCAAATTATCATAACTGGTTAGACTTGAATGTATTTTACT
GTCATAAGCCATACAATTATGCGAGCAACTATATTATTAAAGTACCTTTGATTTCATTCAAAAT
GGAGGCTTCCTGAGGAACTGGTTCATCGTGGAATCTTAAGCCATGTGAAAAATAGGAGAGGCAG
GGGTTGGATAAAAACTGAAATGGAAGAAAGTGGTAAAAAGACCACTGAAGGCATGGAGTGCATC
CAAAGATTTGGGTTTGGATAGGAGTACGAGGAAGTTGGCGATCCAACATCCAAGTGCCAGAACT
ACATAAGAATTTACATAATTCTTTCACCGGTATCATTCCTAGTAGTATTAGGAATATGTGGAAG
TTAGAGATCCAACATTTTGGTTCTCCTGGCTATACTTGGGTTTCACCTCTAGTCCACCCAGCTT
CCTGGGACTAAAGATTGTAGTACTTGTTGTTGAGCTAAGTGCCTAAGTCAAAAGAATTAACAAT
TAATGCAGAAAACTTACTCTTTTGGTTCAAATATAAGTTCTTTGAAAACAGCATATCCAGCCAC
TGCTGCAATTCCAAGTCCCGCAACTATTACAAGACTGTAGGAAGCCCCTTCAGCAAATGTCACT
GGCTTCTCAGGTATGTTGTAGGTAGGGGAATCAAATGGATCTTCAACAGTTTTCAGGTCTTTTG
TACCCTGAGGATGAAGACATCAGTCTTTTATAAGCAATAAAATAAGAAATAGAAAACAACAAAT
CAGGGGGGAATGTCTGATAAAAATTACAGTTCGGAGCAATGTATATGTTGAGATTACAAGGCGA
CAAATATGTGTCAGGTGATTAGTTTGTTGATGGGAATTATGATTTAATTATTCTCCAGCAATAC
GTTGCCAACTGAAAACCTAAGACCATAGACAAGACTGCCCTGCCAGTAAGGAGGTATGGGGCAT
AGAGCAAACCTGTCTCTTCTACCTCTATTCCCTTCCTCTCTGCCTGGGAGCTGCCCTTCCTCTC
TCTTATAACTCCAGCCAGCAAAGATTGAGGACCACATTCAGTAGCCAATGCCAGGAGGGTGGAG
GTGAGAGGAGCAGTGAACGTCTTGCCATCCAGTTGGTTGCCCAGCCTAACAAGAAGCCTACCCA
GACTGCCATGCCTTGCTCTGACTTGGACTGCCTTTGGCTAATTATGCAGCCTCCCAGCTTAGAT
TGCTGAGCATGGGCCGCTCAGGGTGACTAGGTGCTACTGAGTTTCTTAGGTGACACCTAGGCTT
TGTGGTCATCTTCTTTGGAATTCCCTTTTTGTATGAGGTAGTACTATAGTCTACTCTTCTGGCT
TAAGTAAAATTACGGAGCATATTTGGGTAGACTGAGATTATGAACACCAGAGCACCTAGCAGTT
AACTATGTTGATATAACGAAAAAACATTATATTTCCGACATATACGGAATCACCCCTATCTCAT
AGCAATTGAATAACTCTTAACTTTTTTTTCTAACAAGATTATTCACCACCACATTACTGAGATG
ATGCCCATACATTAGTCAACAATTGATCCAGCAGTTCCCTGAGGCAAGATTCCTGACAGTTTTG
ATTGTATGACATGAAAAGAAGCCTACTCAAGATTACACATGTATGCATACAAATGCTCACTGAG
GTGGCATGCTTAATAGTGTCATGTATTGTACTTGATAATCCGCAGTAACATGGCCAACAACATT
GATGAAAATTGTACTCACAGAGGATAAAAAAAAGCAGGAACAAAATATTGAACAATTTAAATAG
CAAAACAGACAAGCTGTTGCTTACCTCTTTTGGGTTCTGCTCTGAAGCTTGTGTGGAGTAGGAT
GCAGAAGGCCTAACTAAATGAGTAGATACTTTGTGGCTTTCACGCTGTGTTGTGAGAGGACTTG
AAGGGTTTGACTTGATCATGTACCACCTTGATTTTTTTAAAGATGAGG
Conservation Information
Conserved circRNAs NA
PMCS 0.318326175
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015