Detail information of Os03g0253800_circ_g.3


General Information
CircRNA Name Os03g0253800_circ_g.3
ID in PlantcircBase osa_circ_041303
Alias NA
Organism Oryza sativa
Position chr3: 8113251-8114444  JBrowse»
Reference genome IRGSP-1.0.38
Type   ue-circRNA
Identification method CIRI-long
Parent gene Os03g0253800
Parent gene annotation Mitochondrial import inner membrane translocase, subunit Tim21 d
omain containing protein. (Os03t0253800-01);Conserved hypothetic
al protein. (Os03t0253800-02);Mitochondrial inner membrane trans
locase complex, subunit Tim21 domain containing protein. (Os03t0
253800-03)
Parent gene strand -
Alternative splicing Os03g0253800_circ_g.1 Os03g0253800_circ_g.2
Support reads NA
Tissues root, leaf
Exon boundary   No-No
Splicing signals   CT-AC
Number of exons covered Os03t0253800-03:3
Os03t0253800-01:3
Os03t0253800-02:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GGGACTAAAGATTGTAGTACTTGTTGTTGAGCTAAGTGCCTAAGTCAAAAGAATTAACAATTAA
TGCAGAAAACTTACTCTTTTGGTTCAAATATAAGTTatgttcaacaccgtcctcatctgtccaa
accttgttaggaatgcgctgccgagctgcacgatttctactttcattgccatatccagtaacag
gataccca
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 185
Transcript exons: 8113251-8113364,8113453-8113501,8114423-8114444
ATGTTCAACACCGTCCTCATCTGTCCAAACCTTGTTAGGAATGCGCTGCCGAGCTGCACGATTT
CTACTTTCATTGCCATATCCAGTAACAGGATACCCAATTTTTGCTGTAACCTGACTGTCATTCT
GTACTCTTGCTAGCGCTTTTCCAAAAATCTTGTACTCTTTTGGTTCAAATATAAGTT

Genomic sequence ATGTTCAACACCGTCCTCATCTGTCCAAACCTTGTTAGGAATGCGCTGCCGAGCTGCACGATTT
CTACTTTCATTGCCATATCCAGTAACAGGATACCCAATTTTTGCTGTAACCTGACAAAACGTGT
GAAAACATGAAGTTGTACCAAGGGGAAAATATGATATGTATGAAGGAAGTGGAATAGCACTAAT
GTCCACAAACCTGACTGTCATTCTGTACTCTTGCTAGCGCTTTTCCAAAAATCTTGTACCTGTA
GAATGGTAACAGCAGTGCAAGCTCTTTCAAATTGCATATAATAATATATGCATTTAACATAAGA
AAAAGATTCGAAGCACAAAAAGAACTTTCACTAGGAAGTAACAAGAACACCCATGCCAACTTGC
TAAGTGACTTGCATAGGATCAAATCAGAAATGTGCCATGGCACTCTGCTGCAGCATACAAGAAA
AAAAATCCATAGCTTACTGATTGTTTCTTTAAAGTTTGGCACCGTAAGTGGCTACATGTGAGGG
TCATAAACAAACCTAGAAACATCTGGATTAATAAATGTGTGTGTGATATTAGTTTTTTAAAAAA
TAAATAAAAAGGAACTATTTCCATATTATACAAAATATTAACGCTACAATGTGAAGAAAGACCA
TTGCACAGTGCATATTTGTAGGACTTACCAAATTATCATAACTGGTTAGACTTGAATGTATTTT
ACTGTCATAAGCCATACAATTATGCGAGCAACTATATTATTAAAGTACCTTTGATTTCATTCAA
AATGGAGGCTTCCTGAGGAACTGGTTCATCGTGGAATCTTAAGCCATGTGAAAAATAGGAGAGG
CAGGGGTTGGATAAAAACTGAAATGGAAGAAAGTGGTAAAAAGACCACTGAAGGCATGGAGTGC
ATCCAAAGATTTGGGTTTGGATAGGAGTACGAGGAAGTTGGCGATCCAACATCCAAGTGCCAGA
ACTACATAAGAATTTACATAATTCTTTCACCGGTATCATTCCTAGTAGTATTAGGAATATGTGG
AAGTTAGAGATCCAACATTTTGGTTCTCCTGGCTATACTTGGGTTTCACCTCTAGTCCACCCAG
CTTCCTGGGACTAAAGATTGTAGTACTTGTTGTTGAGCTAAGTGCCTAAGTCAAAAGAATTAAC
AATTAATGCAGAAAACTTACTCTTTTGGTTCAAATATAAGTT
Conservation Information
Conserved circRNAs NA
PMCS 0.130400865
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References this study