Detail information of Os05g0144200_circ_g.2


General Information
CircRNA Name Os05g0144200_circ_g.2
ID in PlantcircBase osa_circ_026538
Alias NA
Organism Oryza sativa
Position chr5: 2542008-2545206  JBrowse»
Reference genome IRGSP-1.0.38
Type   u-circRNA
Identification method CIRCexplorer
Parent gene Os05g0144150
Parent gene annotation Hypothetical gene. (Os05t0144150-00)
Parent gene strand +
Alternative splicing Os05g0144200_circ_g.1 Os05g0144200_circ_g.3 Os05g0144200_circ_g.4 Os05g0144200_circ_g.5 Os05g0144200_circ_g.6
Support reads 1
Tissues shoot, root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os05t0144200-01:9
Os05t0144200-01:9
Os05t0144150-00:9
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GAAGACGGGACTGGTTGTACATATGGATTCCGCTTCAATACACTCTCATGATATAGAACCTTCT
CTCTCTTCTTCTCAATCTTCCTTTGGACAGGAATATcttatttttctgcttggtgcaagtattc
cacgtttctcgatgctcttatatcggtcccttgctagattacagcacccctgcatgaaatcata
taaaagca
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 916
Transcript exons: 2542008-2542084,2542162-2542228,2543153-2543275,2543365-
2543484,2543954-2544039,2544357-2544467,2544591-2544671,
2544872-2544943,2545028-2545206
CTTATTTTTCTGCTTGGTGCAAGTATTCCACGTTTCTCGATGCTCTTATATCGGTCCCTTGCTA
GATTACAGCACCCCTTCAGCTTTCTAAGAGAGCCACTAATCTCTTCTGTTAATAGAACTTGAAC
AGGAGCTGGTTCAAATTTGTGTCTGCCCAGACGAGGCGGGGCTGACTTCAGTCTTTCCTGTTTA
GCCACAGTTCGCCTTATGTGCCTTTTCTCCTTTTCCTCATCTTCTTTAGCAATTTCATTTATTA
TATCAGGCAGGCTATCTATTTCCTTTGAAAGATTTTCCATCTTCTTTGCTTCAGCTTCTGCTCT
TAACCTCTCCTTACGACGAGCTCTTTTGTTCAGTTCTACTCTTGTAACTCTTTTCGTTTTAGTT
TTCCTCTGAACAGCCAAAGCATCAGCAGCCTGGTCTTCATCACCTTCTTCAACAGCTTCATCTC
CATCATCCGCATCAAGAAAAAATTTATCTTCTTCAGTGATTGCTTCACCAGGAACAATAAGTGG
CACAGGTTTGGGCCCTAACTCTTTCGTGTAGATTTTACGCATCTCATCAGCAACAGCTTGAGCA
AGAGAATCCTGATGTGCTTCGAATGGGGGATTAAATGAACATCCTGGGGCCTCAACTTCAACAG
CAGGAATCACAGATGCGGTAGACCTCTTTTTAGCCTTGTGATCTCCTTTAACATCTTCACCCCA
GATGTCAAGGATCTTATCACCTGAATCATCTTCCATGGGAACAATTTTCGCTTCCTGTGTCTCT
TTCGATTCCTTCTTCTTTGACTTCTTCTTATCCTTCTTTGTCGTTAAAGAAGACGGGACTGGTT
GTACATATGGATTCCGCTTCAATACACTCTCATGATATAGAACCTTCTCTCTCTTCTTCTCAAT
CTTCCTTTGGACAGGAATAT

Genomic sequence CTTATTTTTCTGCTTGGTGCAAGTATTCCACGTTTCTCGATGCTCTTATATCGGTCCCTTGCTA
GATTACAGCACCCCTGCATGAAATCATATAAAAGCAATTAGTTCGTGCTGAATTCTGGACCAGA
ATGGAAACTAAAGGAGTCCCTCTCACCTTCAGCTTTCTAAGAGAGCCACTAATCTCTTCTGTTA
ATAGAACTTGAACAGGAGCTGGTTCAAATCTGTTTGAAATTTGTAATTGTTAATTAGAAAACCA
AACCCATCACCAAATAACAAGGCATATAGCATCACATGTACTCCCTCCGTTTCACAATGTAAGT
CATTCTAGCATTTCCCACATTCATATTGATGTTAATGAATCTAGACATATAAATCTATCTAGAT
TCATTAACATCAATATGAATGTGGGAAATGCTAGAATGACTTACATTGTAAAACGGAGGAAGTA
GCAACAAATCCTGCTATACTAAAATATACCCTCAGAAATAAGTCACTGTCAATGCTAATTTGAA
CAGCATAAAGTAATAGGGCGAGAGAAAAAGGACTTGGATGAGCAGATGAATATTTCTATCTTAA
TTAAGATAAAGAGTTTGTGGCTGACAAGTTCCATGAAAAAGTAGGCACATGCGATGATTTGATT
ATTGCTTTGCTGAACTGTTTTCTAACATGTGATGTGCTTGTAAGTGGGTGCATAACAGTATAAC
ACCAAAATACTTCTCCGGAAGAGAACTTTACTCACAGTTCATAGCGTTTGTGTCAACTACTTCC
TCCGTTTCATATTATAAGACTTTCTAGCATTGCCCCGTCTAGATTCATTAGCATCTATATGAAT
GTAGGCAAATGCTAGAAAGTCTTCTAATATGAAACGGAGGGAGTACTCAACTGCCTCACTTCCA
AAAAGAATACGACTACTACATCACGGTATTCTAAAATTATTGTTCTACTTGAGTGTCCATGAAA
CATCTTGCCTACTAACTTAAATGTCTCCATGATATACTATGGCATCATTATATGTGAAATATGC
AAACTAAACTATTTTGTTAATTTGCAGAATCTTTAAAACAGTGTAGCAATTTTATCCAAGATTA
AAGGAATTGCTGTAAGAAAATATGAGTGACTTAGAGTAGGTGATTTTAGAGGTGTACTTGTGTC
TGCCCAGACGAGGCGGGGCTGACTTCAGTCTTTCCTGTTTAGCCACAGTTCGCCTTATGTGCCT
TTTCTCCTTTTCCTCATCTTCTTTAGCAATTTCATTTATTATATCAGGCAGGCTGCAAAAAGAA
TAATATAATAATACAAGCTAACTTTGACTGAAATGGCAGATCTTGGGAGATTAGTGAACAAAAA
TAAAAAGAACTACCTATCTATTTCCTTTGAAAGATTTTCCATCTTCTTTGCTTCAGCTTCTGCT
CTTAACCTCTCCTTACGACGAGCTCTTTTGTTCAGTTCTACTCTTGTAACTCTTTTCGTTTTAG
TTTTCCTGAAAAAATAATAAATCATACAATCAAAAGTACACTCTAATAGTGTTTGCAAGACAAA
TTTAAAATTTACTGAGTCAGAACAGTGTGTTTTGTTCATCAAGAACAGCACATGGTAATTCCAG
AATTCTTAAGTTATAAGCTGTGACTTTCATGGTTATTTTCACAAATACAGTAAACCTGAATTCT
AATATAATTACTTAGCAAGTGCCACATAGCAATTGAGGAATATAAAAACTCTAAACAGGGATAA
CCCATATTTTGCCCCATTAGCTTATTATCATATAGAAATGGAAAAAGATATATTAAAACATAAA
AGCTTTGAAAATATATATTAAGGGCATAGTGACCATGTTATCCCTAAAAGCATGTAAAAGCTTT
GGAAATTTAAGCATCACGCATAAGTCTATCGTACAGCATAAGTGCATAACCTATTAAAACTATA
CTTCCAATAGAACAGTCGAATCTAACCTCTGAACAGCCAAAGCATCAGCAGCCTGGTCTTCATC
ACCTTCTTCAACAGCTTCATCTCCATCATCCGCATCAAGAAAAAATTTCTGTAGGCAACATGCA
GAAAAAAGGTATAAGTAAGATTGTACGCAAAAATGCTACATAGACATCACAAGCACAATCCACT
AGTAAGGTGAAGGCCTGAAGGGCCATGCTATTCTAAATGAATATACCACAGAACATACTGGCAT
TGTATATGGAATCCAACTCCAAAAATACTCAACTCATAATACACAACGAAGTTCACAAAAAGGC
AGTTTTCATTGCAAAGTAACTAAAAAGTTGAGAGCGCGTGTAACATTTCCAAGACATGAGAATA
TAGAAATTTCAACCATCTATTGGCAAAGAGATGCATAAGACTTACATCTTCTTCAGTGATTGCT
TCACCAGGAACAATAAGTGGCACAGGTTTGGGCCCTAACTCTTTCGTGTAGATTTTACGCATCT
CATCAGCAACAGCTTGAGCAAGAGAATCCTACAATGTCAACAGGATTTTGTTGTTAAATATAAG
TGCTAAGATATCCACTAATATAAGGATCATCAGTTCCTAAAACATGGGTAACATTGCCAAATCC
GGAACATAAATTACAAAACATACCTGATGTGCTTCGAATGGGGGATTAAATGAACATCCTGGGG
CCTCAACTTCAACAGCAGGAATCACAGATGCGGTAGACCTCTGCAACAAAAATGATAAAAAGAA
AAAAAAAGAAACTAACAAATTAAAATTGATATACAAAACCCACAAATTCAGCATATTGCAACAG
AAGAGATTTGTAAATTTTGAAAAATATGACTGCATAGTTCTAAAAATCGACTTTTTGTAATACA
AATAGAGAAAGTGAAAACAGATTAACAGAATGCGGAGCATAGCAACACCTTTTTAGCCTTGTGA
TCTCCTTTAACATCTTCACCCCAGATGTCAAGGATCTTATCACCTGAATCATCTTCCTGTAAAA
CAGATGAGTCCACCTTAGCAACCTGGGACTTGAACAAAAGGAAATTCATTTTGTCTCAAATAAA
AGCAATTGATACCATGGGAACAATTTTCGCTTCCTGTGTCTCTTTCGATTCCTTCTTCTTTGAC
TTCTTCTTATCCTTCTTTGTCGTTAAAGAAGACGGGACTGGTTGTACATATGGATTCCGCTTCA
ATACACTCTCATGATATAGAACCTTCTCTCTCTTCTTCTCAATCTTCCTTTGGACAGGAATAT
Conservation Information
Conserved circRNAs NA
PMCS 0.309866305
Functional Information
Coding potential Y
Potential coding position 2545130-2542207(+)
2545032-2545184(-)
Potential amino acid sequence MDSASIHSHDIEPSLSSSQSSFGQEYLIFLLGASIPRFSMLLYRSLARLQHPFSFLREPLISSV
NRT*(+)
MEDDSGDKILDIWGEDVKGDHKAKKRSTASVIPAVEVEAPGCSFNPPFEAHQDSLAQAVADEMR
KIYTKELGPKPVPLIVPGEAITEEDKFFLDADDGDEAVEEGDEDQAADALAVQRKTKTKRVTRV
ELNKRARRKERLRAEAEAKKMENLSKEIDSLPDIINEIAKEDEEKEKRHIRRTVAKQERLKSAP
PRLGRHKFEPAPVQVLLTEEISGSLRKLKGCCNLARDRYKSIEKRGILAPSRKIRYSCPKED*(
-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017