Detailed infomation of each circRNA
| General Information | |
|---|---|
| CircRNA Name | Solyc10g044450.1_circ_g.2 |
| ID in PlantcircBase | sly_circ_003100 |
| Alias | SL3.0ch10:26382854|26387339 |
| Organism | Solanum lycopersicum |
| Position | chr10: 26423256-26427741 JBrowse» |
| Reference genome | SL2.50.38 |
| Type | ei-circRNA |
| Identification method | CIRI; find_circ |
| Parent gene | Solyc10g044450.1 |
| Parent gene annotation |
protein_coding |
| Parent gene strand | + |
| Alternative splicing | Solyc10g044450.1_circ_g.1 Solyc10g044450.1_circ_igg.1 Solyc10g044450.1_circ_g.2 Solyc10g044450.1_circ_g.3 Solyc10g044450.1_circ_g.4 Solyc10g044450.1_circ_g.5 Solyc10g044450.1_circ_igg.6 |
| Support reads | NA |
| Tissues | leaf |
| Exon boundary | No-Yes |
| Splicing signals | GT-CA |
| Number of exons covered | Solyc10g044450.1.1:5 |
| Conservation Information | |
|---|---|
| Conserved circRNAs | NA |
| PMCS | 0.107197983 |
| Functional Information | |
|---|---|
| Coding potential | N |
| Potential coding position |
NA |
| Potential amino acid sequence |
NA |
| Sponge-miRNAs | NA |
| circRNA-miRNA-mRNA network | VISUALIZATION |
| Potential function description | responsive to low-temperature stress (acting as miRNA sponges) |
| Other Information | |
|---|---|
| References | Yang et al., 2020 |