Detail information of Solyc10g044450.1_circ_g.2


General Information
CircRNA Name Solyc10g044450.1_circ_g.2
ID in PlantcircBase sly_circ_003100
Alias SL3.0ch10:26382854|26387339
Organism Solanum lycopersicum
Position chr10: 26423256-26427741  JBrowse»
Reference genome SL2.50.38
Type   ei-circRNA
Identification method CIRI; find_circ
Parent gene Solyc10g044450.1
Parent gene annotation protein_coding
Parent gene strand +
Alternative splicing Solyc10g044450.1_circ_g.1 Solyc10g044450.1_circ_igg.1 Solyc10g044450.1_circ_g.2 Solyc10g044450.1_circ_g.3 Solyc10g044450.1_circ_g.4 Solyc10g044450.1_circ_g.5 Solyc10g044450.1_circ_igg.6
Support reads NA
Tissues leaf
Exon boundary   No-Yes
Splicing signals   GT-CA
Number of exons covered Solyc10g044450.1.1:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ACATGGTGGTCGTCATGGTTTGAGGGATGTGGATGACACTTCTATTGGGGAAGGAAAACCCGTG
AGAAGGGGAGGCACTTCTGCTTACAATTCTCTTGAGggtcgttcagtaacttctgatagtggga
agaagaaaattctgctcttgaaggggaaggaaaaagaaagtcctaatgtaagtttacatcttta
gtggcaga
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGTCGTTCAGTAACTTCTGATAGTGGGAAGAAGAAAATTCTGCTCTTGAAGGGGAAGGAAAAAG
AAAGTCCTAATGTAAGTTTACATCTTTAGTGGCAGAAGGAGGAGCCTTTTCTTCTCGACTGTCT
TTAATCGTGGCCTTGGAAAGAGAGGGTGTGGGGGTGTAAAGAGATGTAAGCACTGAAGGCCATT
GACACTCCTTTTATCACTGTCCCAAGTAATATGATGTCATGTGCAGAATGGTAACCATTTTATT
GGTAAAGGGAATGGAGACACGAGATATTAGAGCATGCGAAGAAGTTTTTTGACCAATACCATTT
ATTTTGAATGATTAAAGCCATCTGCTGTGTCGATGCTCTATTTGTTACTTCCAACAATTTTCAG
ACTTGCTATGACCATATGTTCAATGGATTAGTTGTTGCCTCTTTTCTGTATAGATTTGTTTGCT
TTTCTTTTGAGGTGCCAAGTCTAAGAGTAGGTCCTGTTCCTGTTGGCTTTGCTTTTCTAAATAA
AAGCATTGCTAAAATATGTTCCATGTGGCTCTGTAATATAGTAATCCATTTTTGACAAAATTAT
GTGGATTACCCTGACAGAGAAAGGTGCCCTTCACGTAATATTGCTCCCTGGAGGATGATATACT
TGTGTAAACTTCTATATTAGTAAACAAAAGACACAGTGATGTTCAAGACATTGTTCTGTACTTA
TATGTGCTTCCTCGACTGAATGAAAAATTCTGGAGGCATGACATTCTAAATTTTTTGGATTTTT
GATGTGATTATCAGATTCTGCATGCTGCAGTTCCCTAATTAGAGAAAGTTTTTGCCACTACATA
GTTGTTTAAGGATGTGCTTTTTTCACTGCTACTTTGTGTCACCAGGCATAACACATCGATGTCA
TCTCAGGTTAATTGGTTTAGTTTATATGTCTGCATCTTGGACTTACTCTTGTTTCTCTTAACTG
TATAGGTTTCTGGTGGTTCATTAGCTCAACAGAATGTGTCATCTGCTCTCAAGAATTCACCTAG
TTTATCTGCTCTGAAACTGAACCAGCACCAAGAGGTAGGTGGCAGAATCATCAGAAGTATTCTT
CTAAAGGATGCCCGACAGAATCAGTCAGCATTTCAATCAGATCAAATACAGGATAAGGACATGA
GACCTCCTCGGCCACCAAGTATGCAGTTGTTTCAGAAGGATACAAGTGGAGCTAATGAGGATAA
GGTTGTTGGAAATGAAAAGCATGTTGTCCACATCGAGAAACAAGAAAGACGTTCTAGGAATAGA
GATAGGCCTGATCGTGGTGTTTGGGCTCCTCTTCGTCGCGCTGATAGTTCACAAGCCAGTAATG
GATCATTATCATCTGGTAATCCTCAGTCTTCCCAAGTGCGGGAGTTTGTTGAAGGTTTGTTCAT
TCGTATTGCTAATAACTATCTTTCTTGATGTATATTCTCAAAATCTGCCTCTTAGGGATTGTTT
GGTATGCTGGACAAACATGGATAGTCCGGGAAAATTTTAACTTGACTAATCTAAAAATTCCAAT
AATAAAAAAAGTATGATTTGCTGTACTTTTTTAATTTAAAAGAAAACATAGATATGAGTTTAGG
TAGTACTTTCCCATAATGAATAGAAAATAAGAGTTAAAACTACATATTGAACAAAATACAAATG
GTACCTATTAATCTATGTACAATGAAATTATATAACACTCATTATTGTAAAGCTAAAGCGTGAC
ATTATCTTTTGATTGATCTAAAGCGTGACATTATCTCCAATCGATCAATATCATCAATCGAAAT
TAACTTGATAAAATTATTATTTCAATGAGGATAAAAAAGGAAAGAAATAATATATTTAAAGTAG
GAACTTTTTTGCAAATAATCAATAAAATGGTCCCATGGACCATAATTTTTTTAAAGAACTTTTT
AAAATAAAATATATAAGAACTCATAAAATAATAACAATATAGCAAGTCATTAAGTTCATTACAT
CAGTAAGACATCAACTTACAAAGTACTGCTAGTTACTAGTGTACTAATATTGAATATGCAAGAA
AAAAAAATATAAAAAGAAGAAAAGGAAAATATAAGGAGATATATAGTACTAACATCTGTAATGG
AGCAAACAAGTGGCTTCAGGTTGTAATAGAATATGAGAGGCAAAAATTGAAGATAAAGGTCTTC
CTTTGAAAATAGAATAATATTTTGAAAAAATAAAAAAATAAAAGAATTTAGGAGTCATTTGGTA
CGTGCATGGTGTAACTACCACAAATGCTCATCTTCCCCTTGAGAATTGGAGAAAGTATTTACTT
CCCCTCATTTACACTCAATTTCATGCTCTGACCAAGTAAATTACTTGGCCAAACAAACAGGTCA
AATGGTGTAACTACACCAAATTATATCCAAATCCAATTAAAAAGTGCTCGTCCTGACTGGCCCG
TATGCTTATTATTTTTATGCCTCTTCCAAGTCTTCTATGATTTCAAATGAGTGTATGCATCATT
GTCTTACCTCGTAATTCTGTTACATGTTAATTGTATGGATGTTTACCTTTGGTTCAGTGTTATC
CTCCTGAAATCATACTCTTATTTTTTGCTTCTGTAGGGGGTCAAGGAGAAACGAAAAATGATCT
GCCAATTGCACGAGGTAGTGAGTTCAGACCAATTGGAATTGGGCGTCATACTAACTCTTCTACT
GATAATGGTTAGTTTGTTTTGGGCCGTGAGATGATTGTGCTAAGTTCTACACAAAATTGTGCTT
AAGTTTGTTTTGCCTGTTAGTTATTGGCTCTTCTATGGTTACTTCTGTTAGAACATTTATACAA
TCCTATTAGAATAGAAATATGTTTATTCAATCCTATTAGAATAGGAATAGGTATATACAATCCT
ATTTAGAATAGGAATAAGAATACAAATAGAAATAGAATTAGTAAATAGTATCCTACTTGGTAAA
AGAATGTTCTTTTCCTATATTTCTCACATGGTATCAGAGACTTTGCGATCTTGGTAAACAATAA
GGATCTTCCACTGTCGGCGGGCGGCTATTATCCATATATGACACCCGTCCGGCCAACAACATTC
CGGTGTCTACTTTTGTGTAGTACTGTTCCATCTTTACAGTGACTACTTTTTCATATTTAATTTG
TGTAGCACCATTTCATCTTTCCGGTGACTACTTTCCCATTTAATTTGTGTAGCAGAGTGCCATC
TTTCCGGTGAATACTTTTTCATCATTAATTTGTGTAGCACCATGCCATCATATCGGTGACTAGT
TTCTCATATCGGATTTGTGTAACACAGTGCCATCATTTCGATGACTACTTTTTAATATCATATA
TGTGTCACACCGTGCTATCTTTTTTGGCGACTACTTTTTTCATGTTTAATTTGTGTAGCACCGT
GCTATACTTCCGGTGACTACCTTTTTTTTTTGCATATTTGATTTGCGTAGCATTGTGCATCTCT
TCCGATTACTTTTCATATTTAATTTGCGCAGTATTGTGGATTTATCCGAACTACTTGCTCATAT
CAGAGTTGCATAGCATCGTGTCATTTCAGTGACGACTCATATTTGATTTGCGTAGTTCCATTCG
TCTTTCTGATTACTCCTCAAACCTGATTTGCATAAGGTTCTACCATCATTCCGACCCTACCCAT
ATTATTTCTCTTTTTCAATAGGGTAGTGCCATCAATCTGACCTTTCCTATATAATTTCTTTTTT
CTAGTTGGGTTGTGCCATCATTCCGACCCGACCCGACCCATATAATTTTATTTTTTAGATTGTG
ACCACATTCAATCATCAAATCTAATACTCCAGCGGATGAGCATGTTCTGACCAATTTTTTGGTG
ACCTTGTTTAATATTGACTCAATCAAATTCATTCCAACATGTGGTATTGTGCATCATATTAGAA
GATTAAGTACATTGATATTGACATTGTCCGTCAAATCCAGTATTTAATGAGAAGACAAACACAT
CGAGATTGACCGTAAATTTTGTGAAGTTGACTGATCAACTTGCATATATCTCACCAAGTGCCTC
ATCGACCCTCGTATTAATTACATTTATAACAAGCTAGGTACATGAATCGTATGCACTAGCTTGA
GGGGGAGTGTTAGAACATGAATAGGTTTATACAATCCTCTTAGAATAGGAGTAGGTATATTCAA
TCCTATTAGAATAGAAACGGGTTTACACAATCCTATTTAGAATAGGAATACGAATACTAATAGA
CATAGAAATAGTTAATAGTATCCTACTTGGTAAAGGATTGTATTCTAGTGCCTATAAATTGGGT
CTCAATGTAATAATGTAGAAACAATAACAATTCAATAATATTCTTTTCCTACATTTCTCACAAC
TTCAGAATTTTCTGATCAATTAAGGTAACTATAAACATGGTGGTCGTCATGGTTTGAGGGATGT
GGATGACACTTCTATTGGGGAAGGAAAACCCGTGAGAAGGGGAGGCACTTCTGCTTACAATTCT
CTTGAG
Conservation Information
Conserved circRNAs NA
PMCS 0.107197983
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description responsive to low-temperature stress (acting as miRNA sponges)
Other Information
References Yang et al., 2020