Detail information of Solyc10g044450.1_circ_g.5


General Information
CircRNA Name Solyc10g044450.1_circ_g.5
ID in PlantcircBase sly_circ_003105
Alias NA
Organism Solanum lycopersicum
Position chr10: 26423257-26427741  JBrowse»
Reference genome SL2.50.38
Type   e-circRNA
Identification method CIRI
Parent gene Solyc10g044450.1
Parent gene annotation protein_coding
Parent gene strand +
Alternative splicing Solyc10g044450.1_circ_g.1 Solyc10g044450.1_circ_g.2 Solyc10g044450.1_circ_igg.1 Solyc10g044450.1_circ_g.2 Solyc10g044450.1_circ_g.3 Solyc10g044450.1_circ_g.4 Solyc10g044450.1_circ_igg.6
Support reads 2
Tissues fruit
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Solyc10g044450.1.1:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ACATGGTGGTCGTCATGGTTTGAGGGATGTGGATGACACTTCTATTGGGGAAGGAAAACCCGTG
AGAAGGGGAGGCACTTCTGCTTACAATTCTCTTGAGgtcgttcagtaacttctgatagtgggaa
gaagaaaattctgctcttgaaggggaaggaaaaagaaagtcctaatgtaagtttacatctttag
tggcagaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTCGTTCAGTAACTTCTGATAGTGGGAAGAAGAAAATTCTGCTCTTGAAGGGGAAGGAAAAAGA
AAGTCCTAATGTAAGTTTACATCTTTAGTGGCAGAAGGAGGAGCCTTTTCTTCTCGACTGTCTT
TAATCGTGGCCTTGGAAAGAGAGGGTGTGGGGGTGTAAAGAGATGTAAGCACTGAAGGCCATTG
ACACTCCTTTTATCACTGTCCCAAGTAATATGATGTCATGTGCAGAATGGTAACCATTTTATTG
GTAAAGGGAATGGAGACACGAGATATTAGAGCATGCGAAGAAGTTTTTTGACCAATACCATTTA
TTTTGAATGATTAAAGCCATCTGCTGTGTCGATGCTCTATTTGTTACTTCCAACAATTTTCAGA
CTTGCTATGACCATATGTTCAATGGATTAGTTGTTGCCTCTTTTCTGTATAGATTTGTTTGCTT
TTCTTTTGAGGTGCCAAGTCTAAGAGTAGGTCCTGTTCCTGTTGGCTTTGCTTTTCTAAATAAA
AGCATTGCTAAAATATGTTCCATGTGGCTCTGTAATATAGTAATCCATTTTTGACAAAATTATG
TGGATTACCCTGACAGAGAAAGGTGCCCTTCACGTAATATTGCTCCCTGGAGGATGATATACTT
GTGTAAACTTCTATATTAGTAAACAAAAGACACAGTGATGTTCAAGACATTGTTCTGTACTTAT
ATGTGCTTCCTCGACTGAATGAAAAATTCTGGAGGCATGACATTCTAAATTTTTTGGATTTTTG
ATGTGATTATCAGATTCTGCATGCTGCAGTTCCCTAATTAGAGAAAGTTTTTGCCACTACATAG
TTGTTTAAGGATGTGCTTTTTTCACTGCTACTTTGTGTCACCAGGCATAACACATCGATGTCAT
CTCAGGTTAATTGGTTTAGTTTATATGTCTGCATCTTGGACTTACTCTTGTTTCTCTTAACTGT
ATAGGTTTCTGGTGGTTCATTAGCTCAACAGAATGTGTCATCTGCTCTCAAGAATTCACCTAGT
TTATCTGCTCTGAAACTGAACCAGCACCAAGAGGTAGGTGGCAGAATCATCAGAAGTATTCTTC
TAAAGGATGCCCGACAGAATCAGTCAGCATTTCAATCAGATCAAATACAGGATAAGGACATGAG
ACCTCCTCGGCCACCAAGTATGCAGTTGTTTCAGAAGGATACAAGTGGAGCTAATGAGGATAAG
GTTGTTGGAAATGAAAAGCATGTTGTCCACATCGAGAAACAAGAAAGACGTTCTAGGAATAGAG
ATAGGCCTGATCGTGGTGTTTGGGCTCCTCTTCGTCGCGCTGATAGTTCACAAGCCAGTAATGG
ATCATTATCATCTGGTAATCCTCAGTCTTCCCAAGTGCGGGAGTTTGTTGAAGGTTTGTTCATT
CGTATTGCTAATAACTATCTTTCTTGATGTATATTCTCAAAATCTGCCTCTTAGGGATTGTTTG
GTATGCTGGACAAACATGGATAGTCCGGGAAAATTTTAACTTGACTAATCTAAAAATTCCAATA
ATAAAAAAAGTATGATTTGCTGTACTTTTTTAATTTAAAAGAAAACATAGATATGAGTTTAGGT
AGTACTTTCCCATAATGAATAGAAAATAAGAGTTAAAACTACATATTGAACAAAATACAAATGG
TACCTATTAATCTATGTACAATGAAATTATATAACACTCATTATTGTAAAGCTAAAGCGTGACA
TTATCTTTTGATTGATCTAAAGCGTGACATTATCTCCAATCGATCAATATCATCAATCGAAATT
AACTTGATAAAATTATTATTTCAATGAGGATAAAAAAGGAAAGAAATAATATATTTAAAGTAGG
AACTTTTTTGCAAATAATCAATAAAATGGTCCCATGGACCATAATTTTTTTAAAGAACTTTTTA
AAATAAAATATATAAGAACTCATAAAATAATAACAATATAGCAAGTCATTAAGTTCATTACATC
AGTAAGACATCAACTTACAAAGTACTGCTAGTTACTAGTGTACTAATATTGAATATGCAAGAAA
AAAAAATATAAAAAGAAGAAAAGGAAAATATAAGGAGATATATAGTACTAACATCTGTAATGGA
GCAAACAAGTGGCTTCAGGTTGTAATAGAATATGAGAGGCAAAAATTGAAGATAAAGGTCTTCC
TTTGAAAATAGAATAATATTTTGAAAAAATAAAAAAATAAAAGAATTTAGGAGTCATTTGGTAC
GTGCATGGTGTAACTACCACAAATGCTCATCTTCCCCTTGAGAATTGGAGAAAGTATTTACTTC
CCCTCATTTACACTCAATTTCATGCTCTGACCAAGTAAATTACTTGGCCAAACAAACAGGTCAA
ATGGTGTAACTACACCAAATTATATCCAAATCCAATTAAAAAGTGCTCGTCCTGACTGGCCCGT
ATGCTTATTATTTTTATGCCTCTTCCAAGTCTTCTATGATTTCAAATGAGTGTATGCATCATTG
TCTTACCTCGTAATTCTGTTACATGTTAATTGTATGGATGTTTACCTTTGGTTCAGTGTTATCC
TCCTGAAATCATACTCTTATTTTTTGCTTCTGTAGGGGGTCAAGGAGAAACGAAAAATGATCTG
CCAATTGCACGAGGTAGTGAGTTCAGACCAATTGGAATTGGGCGTCATACTAACTCTTCTACTG
ATAATGGTTAGTTTGTTTTGGGCCGTGAGATGATTGTGCTAAGTTCTACACAAAATTGTGCTTA
AGTTTGTTTTGCCTGTTAGTTATTGGCTCTTCTATGGTTACTTCTGTTAGAACATTTATACAAT
CCTATTAGAATAGAAATATGTTTATTCAATCCTATTAGAATAGGAATAGGTATATACAATCCTA
TTTAGAATAGGAATAAGAATACAAATAGAAATAGAATTAGTAAATAGTATCCTACTTGGTAAAA
GAATGTTCTTTTCCTATATTTCTCACATGGTATCAGAGACTTTGCGATCTTGGTAAACAATAAG
GATCTTCCACTGTCGGCGGGCGGCTATTATCCATATATGACACCCGTCCGGCCAACAACATTCC
GGTGTCTACTTTTGTGTAGTACTGTTCCATCTTTACAGTGACTACTTTTTCATATTTAATTTGT
GTAGCACCATTTCATCTTTCCGGTGACTACTTTCCCATTTAATTTGTGTAGCAGAGTGCCATCT
TTCCGGTGAATACTTTTTCATCATTAATTTGTGTAGCACCATGCCATCATATCGGTGACTAGTT
TCTCATATCGGATTTGTGTAACACAGTGCCATCATTTCGATGACTACTTTTTAATATCATATAT
GTGTCACACCGTGCTATCTTTTTTGGCGACTACTTTTTTCATGTTTAATTTGTGTAGCACCGTG
CTATACTTCCGGTGACTACCTTTTTTTTTTGCATATTTGATTTGCGTAGCATTGTGCATCTCTT
CCGATTACTTTTCATATTTAATTTGCGCAGTATTGTGGATTTATCCGAACTACTTGCTCATATC
AGAGTTGCATAGCATCGTGTCATTTCAGTGACGACTCATATTTGATTTGCGTAGTTCCATTCGT
CTTTCTGATTACTCCTCAAACCTGATTTGCATAAGGTTCTACCATCATTCCGACCCTACCCATA
TTATTTCTCTTTTTCAATAGGGTAGTGCCATCAATCTGACCTTTCCTATATAATTTCTTTTTTC
TAGTTGGGTTGTGCCATCATTCCGACCCGACCCGACCCATATAATTTTATTTTTTAGATTGTGA
CCACATTCAATCATCAAATCTAATACTCCAGCGGATGAGCATGTTCTGACCAATTTTTTGGTGA
CCTTGTTTAATATTGACTCAATCAAATTCATTCCAACATGTGGTATTGTGCATCATATTAGAAG
ATTAAGTACATTGATATTGACATTGTCCGTCAAATCCAGTATTTAATGAGAAGACAAACACATC
GAGATTGACCGTAAATTTTGTGAAGTTGACTGATCAACTTGCATATATCTCACCAAGTGCCTCA
TCGACCCTCGTATTAATTACATTTATAACAAGCTAGGTACATGAATCGTATGCACTAGCTTGAG
GGGGAGTGTTAGAACATGAATAGGTTTATACAATCCTCTTAGAATAGGAGTAGGTATATTCAAT
CCTATTAGAATAGAAACGGGTTTACACAATCCTATTTAGAATAGGAATACGAATACTAATAGAC
ATAGAAATAGTTAATAGTATCCTACTTGGTAAAGGATTGTATTCTAGTGCCTATAAATTGGGTC
TCAATGTAATAATGTAGAAACAATAACAATTCAATAATATTCTTTTCCTACATTTCTCACAACT
TCAGAATTTTCTGATCAATTAAGGTAACTATAAACATGGTGGTCGTCATGGTTTGAGGGATGTG
GATGACACTTCTATTGGGGAAGGAAAACCCGTGAGAAGGGGAGGCACTTCTGCTTACAATTCTC
TTGAG
Conservation Information
Conserved circRNAs NA
PMCS 0.107203304
Functional Information
Coding potential Y
Potential coding position 26424405-26423265(+)
Potential amino acid sequence MRPPRPPSMQLFQKDTSGANEDKVVGNEKHVVHIEKQERRSRNRDRPDRGVWAPLRRADSSQAS
NGSLSSGNPQSSQVREFVEGGQGETKNDLPIARGSEFRPIGIGRHTNSSTDNGNYKHGGRHGLR
DVDDTSIGEGKPVRRGGTSAYNSLEVVQ*(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zuo et al., 2016