Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Solyc10g044450.1_circ_g.5 |
ID in PlantcircBase | sly_circ_003105 |
Alias | NA |
Organism | Solanum lycopersicum |
Position | chr10: 26423257-26427741 JBrowse» |
Reference genome | SL2.50.38 |
Type | e-circRNA |
Identification method | CIRI |
Parent gene | Solyc10g044450.1 |
Parent gene annotation |
protein_coding |
Parent gene strand | + |
Alternative splicing | Solyc10g044450.1_circ_g.1 Solyc10g044450.1_circ_g.2 Solyc10g044450.1_circ_igg.1 Solyc10g044450.1_circ_g.2 Solyc10g044450.1_circ_g.3 Solyc10g044450.1_circ_g.4 Solyc10g044450.1_circ_igg.6 |
Support reads | 2 |
Tissues | fruit |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Solyc10g044450.1.1:5 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.107203304 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
26424405-26423265(+) |
Potential amino acid sequence |
MRPPRPPSMQLFQKDTSGANEDKVVGNEKHVVHIEKQERRSRNRDRPDRGVWAPLRRADSSQAS NGSLSSGNPQSSQVREFVEGGQGETKNDLPIARGSEFRPIGIGRHTNSSTDNGNYKHGGRHGLR DVDDTSIGEGKPVRRGGTSAYNSLEVVQ*(+) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Zuo et al., 2016 |