Detail information of Solyc10g044450.1_circ_igg.6


General Information
CircRNA Name Solyc10g044450.1_circ_igg.6
ID in PlantcircBase sly_circ_003106
Alias 10:21897915|21902548, Slcirc152
Organism Solanum lycopersicum
Position chr10: 26423257-26427890  JBrowse»
Reference genome SL2.50.38
Type   igg-circRNA
Identification method CIRI
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing Solyc10g044450.1_circ_g.1 Solyc10g044450.1_circ_g.2 Solyc10g044450.1_circ_igg.1 Solyc10g044450.1_circ_g.2 Solyc10g044450.1_circ_g.3 Solyc10g044450.1_circ_g.4 Solyc10g044450.1_circ_g.5
Support reads 11/21
Tissues fruit/leaf
Exon boundary   Yes-No
Splicing signals   GT-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTTGTACATTTACTGATGTACTTGCATGGACTATGATATCAATGCAGAAACAAGTGTGGGTTCA
AAAGTCAAGTTCTGGTTCTTAGTTTGTTATTTAATGgtcgttcagtaacttctgatagtgggaa
gaagaaaattctgctcttgaaggggaaggaaaaagaaagtcctaatgtaagtttacatctttag
tggcagaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTCGTTCAGTAACTTCTGATAGTGGGAAGAAGAAAATTCTGCTCTTGAAGGGGAAGGAAAAAGA
AAGTCCTAATGTAAGTTTACATCTTTAGTGGCAGAAGGAGGAGCCTTTTCTTCTCGACTGTCTT
TAATCGTGGCCTTGGAAAGAGAGGGTGTGGGGGTGTAAAGAGATGTAAGCACTGAAGGCCATTG
ACACTCCTTTTATCACTGTCCCAAGTAATATGATGTCATGTGCAGAATGGTAACCATTTTATTG
GTAAAGGGAATGGAGACACGAGATATTAGAGCATGCGAAGAAGTTTTTTGACCAATACCATTTA
TTTTGAATGATTAAAGCCATCTGCTGTGTCGATGCTCTATTTGTTACTTCCAACAATTTTCAGA
CTTGCTATGACCATATGTTCAATGGATTAGTTGTTGCCTCTTTTCTGTATAGATTTGTTTGCTT
TTCTTTTGAGGTGCCAAGTCTAAGAGTAGGTCCTGTTCCTGTTGGCTTTGCTTTTCTAAATAAA
AGCATTGCTAAAATATGTTCCATGTGGCTCTGTAATATAGTAATCCATTTTTGACAAAATTATG
TGGATTACCCTGACAGAGAAAGGTGCCCTTCACGTAATATTGCTCCCTGGAGGATGATATACTT
GTGTAAACTTCTATATTAGTAAACAAAAGACACAGTGATGTTCAAGACATTGTTCTGTACTTAT
ATGTGCTTCCTCGACTGAATGAAAAATTCTGGAGGCATGACATTCTAAATTTTTTGGATTTTTG
ATGTGATTATCAGATTCTGCATGCTGCAGTTCCCTAATTAGAGAAAGTTTTTGCCACTACATAG
TTGTTTAAGGATGTGCTTTTTTCACTGCTACTTTGTGTCACCAGGCATAACACATCGATGTCAT
CTCAGGTTAATTGGTTTAGTTTATATGTCTGCATCTTGGACTTACTCTTGTTTCTCTTAACTGT
ATAGGTTTCTGGTGGTTCATTAGCTCAACAGAATGTGTCATCTGCTCTCAAGAATTCACCTAGT
TTATCTGCTCTGAAACTGAACCAGCACCAAGAGGTAGGTGGCAGAATCATCAGAAGTATTCTTC
TAAAGGATGCCCGACAGAATCAGTCAGCATTTCAATCAGATCAAATACAGGATAAGGACATGAG
ACCTCCTCGGCCACCAAGTATGCAGTTGTTTCAGAAGGATACAAGTGGAGCTAATGAGGATAAG
GTTGTTGGAAATGAAAAGCATGTTGTCCACATCGAGAAACAAGAAAGACGTTCTAGGAATAGAG
ATAGGCCTGATCGTGGTGTTTGGGCTCCTCTTCGTCGCGCTGATAGTTCACAAGCCAGTAATGG
ATCATTATCATCTGGTAATCCTCAGTCTTCCCAAGTGCGGGAGTTTGTTGAAGGTTTGTTCATT
CGTATTGCTAATAACTATCTTTCTTGATGTATATTCTCAAAATCTGCCTCTTAGGGATTGTTTG
GTATGCTGGACAAACATGGATAGTCCGGGAAAATTTTAACTTGACTAATCTAAAAATTCCAATA
ATAAAAAAAGTATGATTTGCTGTACTTTTTTAATTTAAAAGAAAACATAGATATGAGTTTAGGT
AGTACTTTCCCATAATGAATAGAAAATAAGAGTTAAAACTACATATTGAACAAAATACAAATGG
TACCTATTAATCTATGTACAATGAAATTATATAACACTCATTATTGTAAAGCTAAAGCGTGACA
TTATCTTTTGATTGATCTAAAGCGTGACATTATCTCCAATCGATCAATATCATCAATCGAAATT
AACTTGATAAAATTATTATTTCAATGAGGATAAAAAAGGAAAGAAATAATATATTTAAAGTAGG
AACTTTTTTGCAAATAATCAATAAAATGGTCCCATGGACCATAATTTTTTTAAAGAACTTTTTA
AAATAAAATATATAAGAACTCATAAAATAATAACAATATAGCAAGTCATTAAGTTCATTACATC
AGTAAGACATCAACTTACAAAGTACTGCTAGTTACTAGTGTACTAATATTGAATATGCAAGAAA
AAAAAATATAAAAAGAAGAAAAGGAAAATATAAGGAGATATATAGTACTAACATCTGTAATGGA
GCAAACAAGTGGCTTCAGGTTGTAATAGAATATGAGAGGCAAAAATTGAAGATAAAGGTCTTCC
TTTGAAAATAGAATAATATTTTGAAAAAATAAAAAAATAAAAGAATTTAGGAGTCATTTGGTAC
GTGCATGGTGTAACTACCACAAATGCTCATCTTCCCCTTGAGAATTGGAGAAAGTATTTACTTC
CCCTCATTTACACTCAATTTCATGCTCTGACCAAGTAAATTACTTGGCCAAACAAACAGGTCAA
ATGGTGTAACTACACCAAATTATATCCAAATCCAATTAAAAAGTGCTCGTCCTGACTGGCCCGT
ATGCTTATTATTTTTATGCCTCTTCCAAGTCTTCTATGATTTCAAATGAGTGTATGCATCATTG
TCTTACCTCGTAATTCTGTTACATGTTAATTGTATGGATGTTTACCTTTGGTTCAGTGTTATCC
TCCTGAAATCATACTCTTATTTTTTGCTTCTGTAGGGGGTCAAGGAGAAACGAAAAATGATCTG
CCAATTGCACGAGGTAGTGAGTTCAGACCAATTGGAATTGGGCGTCATACTAACTCTTCTACTG
ATAATGGTTAGTTTGTTTTGGGCCGTGAGATGATTGTGCTAAGTTCTACACAAAATTGTGCTTA
AGTTTGTTTTGCCTGTTAGTTATTGGCTCTTCTATGGTTACTTCTGTTAGAACATTTATACAAT
CCTATTAGAATAGAAATATGTTTATTCAATCCTATTAGAATAGGAATAGGTATATACAATCCTA
TTTAGAATAGGAATAAGAATACAAATAGAAATAGAATTAGTAAATAGTATCCTACTTGGTAAAA
GAATGTTCTTTTCCTATATTTCTCACATGGTATCAGAGACTTTGCGATCTTGGTAAACAATAAG
GATCTTCCACTGTCGGCGGGCGGCTATTATCCATATATGACACCCGTCCGGCCAACAACATTCC
GGTGTCTACTTTTGTGTAGTACTGTTCCATCTTTACAGTGACTACTTTTTCATATTTAATTTGT
GTAGCACCATTTCATCTTTCCGGTGACTACTTTCCCATTTAATTTGTGTAGCAGAGTGCCATCT
TTCCGGTGAATACTTTTTCATCATTAATTTGTGTAGCACCATGCCATCATATCGGTGACTAGTT
TCTCATATCGGATTTGTGTAACACAGTGCCATCATTTCGATGACTACTTTTTAATATCATATAT
GTGTCACACCGTGCTATCTTTTTTGGCGACTACTTTTTTCATGTTTAATTTGTGTAGCACCGTG
CTATACTTCCGGTGACTACCTTTTTTTTTTGCATATTTGATTTGCGTAGCATTGTGCATCTCTT
CCGATTACTTTTCATATTTAATTTGCGCAGTATTGTGGATTTATCCGAACTACTTGCTCATATC
AGAGTTGCATAGCATCGTGTCATTTCAGTGACGACTCATATTTGATTTGCGTAGTTCCATTCGT
CTTTCTGATTACTCCTCAAACCTGATTTGCATAAGGTTCTACCATCATTCCGACCCTACCCATA
TTATTTCTCTTTTTCAATAGGGTAGTGCCATCAATCTGACCTTTCCTATATAATTTCTTTTTTC
TAGTTGGGTTGTGCCATCATTCCGACCCGACCCGACCCATATAATTTTATTTTTTAGATTGTGA
CCACATTCAATCATCAAATCTAATACTCCAGCGGATGAGCATGTTCTGACCAATTTTTTGGTGA
CCTTGTTTAATATTGACTCAATCAAATTCATTCCAACATGTGGTATTGTGCATCATATTAGAAG
ATTAAGTACATTGATATTGACATTGTCCGTCAAATCCAGTATTTAATGAGAAGACAAACACATC
GAGATTGACCGTAAATTTTGTGAAGTTGACTGATCAACTTGCATATATCTCACCAAGTGCCTCA
TCGACCCTCGTATTAATTACATTTATAACAAGCTAGGTACATGAATCGTATGCACTAGCTTGAG
GGGGAGTGTTAGAACATGAATAGGTTTATACAATCCTCTTAGAATAGGAGTAGGTATATTCAAT
CCTATTAGAATAGAAACGGGTTTACACAATCCTATTTAGAATAGGAATACGAATACTAATAGAC
ATAGAAATAGTTAATAGTATCCTACTTGGTAAAGGATTGTATTCTAGTGCCTATAAATTGGGTC
TCAATGTAATAATGTAGAAACAATAACAATTCAATAATATTCTTTTCCTACATTTCTCACAACT
TCAGAATTTTCTGATCAATTAAGGTAACTATAAACATGGTGGTCGTCATGGTTTGAGGGATGTG
GATGACACTTCTATTGGGGAAGGAAAACCCGTGAGAAGGGGAGGCACTTCTGCTTACAATTCTC
TTGAGGTGTGTTTTCTTTTTAAATTCTTATTTGTACTTTGATCTTTGATTTTCCCTTGTACATT
TACTGATGTACTTGCATGGACTATGATATCAATGCAGAAACAAGTGTGGGTTCAAAAGTCAAGT
TCTGGTTCTTAGTTTGTTATTTAATG
Conservation Information
Conserved circRNAs NA
PMCS 0.106561642
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description fruit ripening
Other Information
References Yin et al., 2018; Wang et al., 2018b