Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Solyc10g044450.1_circ_igg.6 |
ID in PlantcircBase | sly_circ_003106 |
Alias | 10:21897915|21902548, Slcirc152 |
Organism | Solanum lycopersicum |
Position | chr10: 26423257-26427890 JBrowse» |
Reference genome | SL2.50.38 |
Type | igg-circRNA |
Identification method | CIRI |
Parent gene | NA |
Parent gene annotation | NA |
Parent gene strand | NA |
Alternative splicing | Solyc10g044450.1_circ_g.1 Solyc10g044450.1_circ_g.2 Solyc10g044450.1_circ_igg.1 Solyc10g044450.1_circ_g.2 Solyc10g044450.1_circ_g.3 Solyc10g044450.1_circ_g.4 Solyc10g044450.1_circ_g.5 |
Support reads | 11/21 |
Tissues | fruit/leaf |
Exon boundary | Yes-No |
Splicing signals | GT-AG |
Number of exons covered | NA |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.106561642 |
Functional Information | |
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Coding potential | N |
Potential coding position |
NA |
Potential amino acid sequence |
NA |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | fruit ripening |
Other Information | |
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References | Yin et al., 2018; Wang et al., 2018b |