Detail information of Os09g0543100_circ_g.4


General Information
CircRNA Name Os09g0543100_circ_g.4
ID in PlantcircBase osa_circ_040082
Alias NA
Organism Oryza sativa
Position chr9: 21393535-21395621  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os09g0543100
Parent gene annotation Similar to predicted protein. (Os09t0543100-01);Similar to Phosp
holipase D nu-2 (Fragment). (Os09t0543100-02);Similar to predict
ed protein. (Os09t0543100-03)
Parent gene strand +
Alternative splicing Os09g0543100_circ_g.2 Os09g0543100_circ_g.3 Os09g0543100_circ_g.5 Os09g0543100_circ_g.6 Os09g0543100_circ_g.7 Os09g0543100_circ_g.8 Os09g0543100_circ_g.9 Os09g0543100_circ_g.10
Support reads 1
Tissues root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os09t0543100-01:1
Os09t0543100-02:6
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GATTAGGGCTGGTGAACGGTTTGCAGTTTATGTAGTCATACCGATGTGGCCTGAAGGAGTCCCT
ACAGCAGCTTCTGTACAAGAAATTCTTTTCTTTCAGggtggagtgatggcgacacatgatgaag
aaactagaaaattcttcaagcattcctcagtcatttgtgttctttcacctcggtatgccagcag
taagctga
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 162
Transcript exons: 21393535-21393585,21395511-21395621
GGTGGAGTGATGGCGACACATGATGAAGAAACTAGAAAATTCTTCAAGCATATTGCAAGCAAGA
TTAGGGCTGGTGAACGGTTTGCAGTTTATGTAGTCATACCGATGTGGCCTGAAGGAGTCCCTAC
AGCAGCTTCTGTACAAGAAATTCTTTTCTTTCAG

Transcript length: 954
Transcript exons: 21393535-21393648,21394102-21394299,21394445-21394720,21
394807-21394875,21395031-21395178,21395473-21395621
GGTGGAGTGATGGCGACACATGATGAAGAAACTAGAAAATTCTTCAAGCATTCCTCAGTCATTT
GTGTTCTTTCACCTCGGTATGCCAGCAGTAAGCTGAGCATTTTCAAACAACAGGTTGTTGGGAC
TTTGTTTACCCATCATCAAAAATGCGTGCTGGTTGATACACAAGCTTGGGGAAACAAGCGGAAG
ATTACTGCTTTTATCGGTGGCCTGGATCTTTGTGATGGGCGTTATGATACACCCGAACATAGGC
TTTTTAAGGATCTTGACACAGTATTCGATAATGATTATCATAACCCTACATTTCCGTCAGGTGC
AAAGGGGGGGCCTAGACAACCATGGCATGACCTTCACTGTAGGATTGATGGTCCAGCTGCGTAT
GATGTCTTGAAAAATTTTGAGCAACGCTGGAGAAAGGCAACGAAATGGCGTGAACGATTTAGAA
AAGTGTCTCATTGGAAAGATGATGCCCTGATAAAGTTGGAACGTATCTCATGGATACTTAGCCC
TTCGCCTACTATTCCAAATGATGATATTAGTTTGCGGGTTTCAAAAGAAGAAGATCCTGAAAAT
TGGCATGTTCAGGTATTCCGGTCAATAGACTCTGGTTCGCTTAAAGGGTTTCCTAGTGATTGCA
AAGAAGCTTCAAAGCAGAATCTTATTTGCCGGAAGGACCTGATAATTGATAAGAGCATCCACAC
TGCTTATGTCCGGGCAATCAGATCCGCCCAGCATTTCATTTATATTGAAAATCAATATTTCCTT
GGGTCATCATATGCTTGGCCGTCCTATGTTAATTCAGGTGCTGACAATCTGGTACCTATTGAAT
TGGCCCTCAAAATTGCAAGCAAGATTAGGGCTGGTGAACGGTTTGCAGTTTATGTAGTCATACC
GATGTGGCCTGAAGGAGTCCCTACAGCAGCTTCTGTACAAGAAATTCTTTTCTTTCAG

Genomic sequence GGTGGAGTGATGGCGACACATGATGAAGAAACTAGAAAATTCTTCAAGCATTCCTCAGTCATTT
GTGTTCTTTCACCTCGGTATGCCAGCAGTAAGCTGAGCATTTTCAAACAACAGGCAAGTGCCAG
GCTGGATAGTATATAGCTGATAACTGTTAGCACTTTTATACGTTCCAGATAATGGTTATCACCA
TAAACCTTAAGGAAGTTTATTGTTTGCTCATGTGTGCTGCCCCTTCTCGAGCTTATGTGTGCTG
CCCCTTCTTGAGGAGCTCCATGTTCTATAGAAACTCATTATGGGTTGGTGTCATTTGGATATAA
CATGATGCAACCAAGTTGATGGACAGCCTTGTTTAAACAAAATCAGGATATGTCTATCATCTAT
TGTTTTGAATAAGCCCACTATTTATTATATTGTGAACGTTTACACTGAAATTTAGTATGTATTT
TATTCTCTATTTTTTATTATCCTAAGTTTGTAGAAAAGTTTGCAGGTTGTTGGGACTTCTGTAA
CTTAATTTATTGAATTTTATTCCCTCATTTTGATGATCTTGAATTTTGTAGCTTGCAGGTTGTT
GGGACTTTGTTTACCCATCATCAAAAATGCGTGCTGGTTGATACACAAGCTTGGGGAAACAAGC
GGAAGATTACTGCTTTTATCGGTGGCCTGGATCTTTGTGATGGGCGTTATGATACACCCGAACA
TAGGCTTTTTAAGGATCTTGACACAGTATTCGATAATGATTATCATAACCCTACATTTCCGGTG
AGTACTTATGTTTTGCTAGTAATAAGTTCTACATAACTTCTCCATGCCATACCAACATGGAGTC
AGGACATAGGCTCCTGGGTTCGTGGTGCAATATTTCCTGACTGTCATCATTTCAATACTTTATA
CTCTCTTGATGCAGTCAGGTGCAAAGGGGGGGCCTAGACAACCATGGCATGACCTTCACTGTAG
GATTGATGGTCCAGCTGCGTATGATGTCTTGAAAAATTTTGAGCAACGCTGGAGAAAGGCAACG
AAATGGCGTGAACGATTTAGAAAAGTGTCTCATTGGAAAGATGATGCCCTGATAAAGTTGGAAC
GTATCTCATGGATACTTAGCCCTTCGCCTACTATTCCAAATGATGATATTAGTTTGCGGGTTTC
AAAAGAAGAAGATCCTGAAAATTGGCATGTTCAGGTATTACCACTCCTCTTTTAATTTCTGCTT
GTGCTAAAATACTTCTGAAAATTTTGGCAGCGATACAAATATGTTATTTTTCTCAGGTATTCCG
GTCAATAGACTCTGGTTCGCTTAAAGGGTTTCCTAGTGATTGCAAAGAAGCTTCAAAGCAGGTT
AGTCCGATACATCTCCTAATCTGAAATGTTAAACAAATCTACAGTTTTGATGACGTTAGTGGTC
CTATATTTTTTTATTCTTACTTTCTCATCTTACACCATTCCAAAATGTGATCTGGTAAATGTTT
TAACTGTTTCATGTACTTCTGCAGAATCTTATTTGCCGGAAGGACCTGATAATTGATAAGAGCA
TCCACACTGCTTATGTCCGGGCAATCAGATCCGCCCAGCATTTCATTTATATTGAAAATCAATA
TTTCCTTGGGTCATCATATGCTTGGCCGTCCTATGTTAATTCAGGTGTGCTGCTTTCGCCTTTT
AGATCCTGCCTGTAATCCTTGCTAGTTGTAATTTAACACTCCAAGTTGCCCACACGATCTTCCG
CTGATAAATAAGGCCAACTATTCCTCCATATCCTTCTAAAAACAAAGGTCATAACAGATGAATG
GAAAACATTTTTTTATGTTACACTTTTAGGTTGGCCGAGTTTTTATTTTCCCATCCTGTTGTTG
TTGATGGTGCTGCTGTGTGATCTACAGCATTAGTGTTTAATGATTTACATAAAAATGGAACTGA
CCTCTTAGTGTTTTGCAGGTGCTGACAATCTGGTACCTATTGAATTGGCCCTCAAAATTGCAAG
CAAGATTAGGGCTGGTGAACGGTTTGCAGTTTATGTAGTCATACCGATGTGGCCTGAAGGAGTC
CCTACAGCAGCTTCTGTACAAGAAATTCTTTTCTTTCAG
Conservation Information
Conserved circRNAs NA
PMCS 0.364053753
Functional Information
Coding potential Y
Potential coding position 21393545-21395618(+)
21393587-21395177(-)
21393640-21395620(-)
Potential amino acid sequence MATHDEETRKFFKHSSVICVLSPRYASSKLSIFKQQVVGTLFTHHQKCVLVDTQAWGNKRKITA
FIGGLDLCDGRYDTPEHRLFKDLDTVFDNDYHNPTFPSGAKGGPRQPWHDLHCRIDGPAAYDVL
KNFEQRWRKATKWRERFRKVSHWKDDALIKLERISWILSPSPTIPNDDISLRVSKEEDPENWHV
QVFRSIDSGSLKGFPSDCKEASKQNLICRKDLIIDKSIHTAYVRAIRSAQHFIYIENQYFLGSS
YAWPSYVNSGADNLVPIELALKIASKIRAGERFAVYVVIPMWPEGVPTAASVQEILFFQGGVMA
THDEETRKFFKHSSVICVLSPRYASSKLSIFKQQVVGTLFTHHQKCVLVDTQAWGNKRKITAFI
GGLDLCDGRYDTPEHRLFKDLDTVFDNDYHNPTFPSGAKGGPRQPWHDLHCRIDGPAAYDVLKN
FEQRWRKATKWRERFRKVSHWKDDALIKLERISWILSPSPTIPNDDISLRVSKEEDPENWHVQV
FRSIDSGSLKGFPSDCKEASKQNLICRKDLIIDKSIHTAYVRAIRSAQHFIYIENQYFLGSSYA
WPSYVNSGADNLVPIELALKIASKIRAGERFAVYVVIPMWPEGVPTAASVQEILFFQGGVMATH
DEETRKFFKHSSVICVLSPRYASSKLSIFKQQVVGTLFTHHQKCVLVDTQAWGNKRKITAFIGG
LDLCDGRYDTPEHRLFKDLDTVFDNDYHNPTFPSGAKGGPRQPWHDLHCRIDGPAAYDVLKNFE
QRWRKATKWRERFRKVSHWKDDALIKLERISWILSPSPTIPNDDISLRVSKEEDPENWHVQVFR
SIDSGSLKGFPSDCKEASKQNLICRKDLIIDKSIHTAYVRAIRSAQHFIYIENQYFLGSSYAWP
SYVNSGADNLVPIELALKIASKIRAGERFAVYVVIPMWPEGVPTAASVQEILFFQGGVMATHDE
ETRKFFKHSSVICVLSPRYASSKLSIFKQQVVGTLFTHHQKCVLVDTQAWGNKRKITAFIGGLD
LCDGRYDTPEHRLFKDLDTVFDNDYHNPTFPSGAKGGPRQPWHDLHCRIDGPAAYDVLKNFEQR
WRKATKWRERFRKVSHWKDDALIKLERISWILSPSPTIPNDDISLRVSKEEDPENWHVQVFRSI
DSGSLKGFPSDCKEASKQNLICRKDLIIDKSIHTAYVRAIRSAQHFIYIENQYFLGSSYAWPSY
VNSGADNLVPIELALKIASKIRAGERFAVYVVIPMWPEGVPTAASVQEILFFQ(+)
MLEEFSSFFIMCRHHSTLKEKNFLYRSCCRDSFRPHRYDYINCKPFTSPNLACNFEGQFNRYQI
VST*(-)
MLSLLLAYRGERTQMTEECLKNFLVSSSCVAITPP*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017