Detail information of Os09g0543100_circ_g.5


General Information
CircRNA Name Os09g0543100_circ_g.5
ID in PlantcircBase osa_circ_040083
Alias NA
Organism Oryza sativa
Position chr9: 21393535-21396454  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer, PcircRNA_finder
Parent gene Os09g0543100
Parent gene annotation Similar to predicted protein. (Os09t0543100-01);Similar to Phosp
holipase D nu-2 (Fragment). (Os09t0543100-02);Similar to predict
ed protein. (Os09t0543100-03)
Parent gene strand +
Alternative splicing Os09g0543100_circ_g.2 Os09g0543100_circ_g.3 Os09g0543100_circ_g.4 Os09g0543100_circ_g.6 Os09g0543100_circ_g.7 Os09g0543100_circ_g.8 Os09g0543100_circ_g.9 Os09g0543100_circ_g.10
Support reads 1
Tissues seed
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os09t0543100-02:7
Os09t0543100-01:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGCACACCCTCAAGATTACTTGAACTTCTATTGTCTGGGCAATCGAGAAGAATCATCATCATCA
AATGGCAGCCCTGAATCTAACGATAAAAGTGCAGCGggtggagtgatggcgacacatgatgaag
aaactagaaaattcttcaagcattcctcagtcatttgtgttctttcacctcggtatgccagcag
taagctga
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGTGGAGTGATGGCGACACATGATGAAGAAACTAGAAAATTCTTCAAGCATTCCTCAGTCATTT
GTGTTCTTTCACCTCGGTATGCCAGCAGTAAGCTGAGCATTTTCAAACAACAGGCAAGTGCCAG
GCTGGATAGTATATAGCTGATAACTGTTAGCACTTTTATACGTTCCAGATAATGGTTATCACCA
TAAACCTTAAGGAAGTTTATTGTTTGCTCATGTGTGCTGCCCCTTCTCGAGCTTATGTGTGCTG
CCCCTTCTTGAGGAGCTCCATGTTCTATAGAAACTCATTATGGGTTGGTGTCATTTGGATATAA
CATGATGCAACCAAGTTGATGGACAGCCTTGTTTAAACAAAATCAGGATATGTCTATCATCTAT
TGTTTTGAATAAGCCCACTATTTATTATATTGTGAACGTTTACACTGAAATTTAGTATGTATTT
TATTCTCTATTTTTTATTATCCTAAGTTTGTAGAAAAGTTTGCAGGTTGTTGGGACTTCTGTAA
CTTAATTTATTGAATTTTATTCCCTCATTTTGATGATCTTGAATTTTGTAGCTTGCAGGTTGTT
GGGACTTTGTTTACCCATCATCAAAAATGCGTGCTGGTTGATACACAAGCTTGGGGAAACAAGC
GGAAGATTACTGCTTTTATCGGTGGCCTGGATCTTTGTGATGGGCGTTATGATACACCCGAACA
TAGGCTTTTTAAGGATCTTGACACAGTATTCGATAATGATTATCATAACCCTACATTTCCGGTG
AGTACTTATGTTTTGCTAGTAATAAGTTCTACATAACTTCTCCATGCCATACCAACATGGAGTC
AGGACATAGGCTCCTGGGTTCGTGGTGCAATATTTCCTGACTGTCATCATTTCAATACTTTATA
CTCTCTTGATGCAGTCAGGTGCAAAGGGGGGGCCTAGACAACCATGGCATGACCTTCACTGTAG
GATTGATGGTCCAGCTGCGTATGATGTCTTGAAAAATTTTGAGCAACGCTGGAGAAAGGCAACG
AAATGGCGTGAACGATTTAGAAAAGTGTCTCATTGGAAAGATGATGCCCTGATAAAGTTGGAAC
GTATCTCATGGATACTTAGCCCTTCGCCTACTATTCCAAATGATGATATTAGTTTGCGGGTTTC
AAAAGAAGAAGATCCTGAAAATTGGCATGTTCAGGTATTACCACTCCTCTTTTAATTTCTGCTT
GTGCTAAAATACTTCTGAAAATTTTGGCAGCGATACAAATATGTTATTTTTCTCAGGTATTCCG
GTCAATAGACTCTGGTTCGCTTAAAGGGTTTCCTAGTGATTGCAAAGAAGCTTCAAAGCAGGTT
AGTCCGATACATCTCCTAATCTGAAATGTTAAACAAATCTACAGTTTTGATGACGTTAGTGGTC
CTATATTTTTTTATTCTTACTTTCTCATCTTACACCATTCCAAAATGTGATCTGGTAAATGTTT
TAACTGTTTCATGTACTTCTGCAGAATCTTATTTGCCGGAAGGACCTGATAATTGATAAGAGCA
TCCACACTGCTTATGTCCGGGCAATCAGATCCGCCCAGCATTTCATTTATATTGAAAATCAATA
TTTCCTTGGGTCATCATATGCTTGGCCGTCCTATGTTAATTCAGGTGTGCTGCTTTCGCCTTTT
AGATCCTGCCTGTAATCCTTGCTAGTTGTAATTTAACACTCCAAGTTGCCCACACGATCTTCCG
CTGATAAATAAGGCCAACTATTCCTCCATATCCTTCTAAAAACAAAGGTCATAACAGATGAATG
GAAAACATTTTTTTATGTTACACTTTTAGGTTGGCCGAGTTTTTATTTTCCCATCCTGTTGTTG
TTGATGGTGCTGCTGTGTGATCTACAGCATTAGTGTTTAATGATTTACATAAAAATGGAACTGA
CCTCTTAGTGTTTTGCAGGTGCTGACAATCTGGTACCTATTGAATTGGCCCTCAAAATTGCAAG
CAAGATTAGGGCTGGTGAACGGTTTGCAGTTTATGTAGTCATACCGATGTGGCCTGAAGGAGTC
CCTACAGCAGCTTCTGTACAAGAAATTCTTTTCTTTCAGGTAAGTTTATTTATTATTTTTAACA
GTATGTAATTTCACAGAACTACTTTCAGATAAGCCATAGCTACTTTCACTGGCTATTTCACTTT
GCACCAACATGGCTACGGTTGGATTCTCCTCACGTGTGCTAAGTCGCTAATCCTAGGGTAGGGG
ACACACTTGTGCATTCATGTTGAGGAATAAGGACCACTTGTCAAGGGCTTGCAATTTGGCTGTG
TGGAATTGAGTCCAATAGCTGTCAAGAAGCCCATAATCCAGCAGCTAATGAAAACCGTTAATTC
TGTTCTCTTTTTATGATTTCTGCCTTGCAACTTCAGTCTCAGGTTTCCAAACACTAGGAATATT
CTTGCTATCTGCACTCCCCTTGGCATATTTTCTAATGTTATTGTTTTCTAGCCTTTTTATACGG
CTATATACTTATTCACTTCTTTTGAGGCAAGCCCTTCCACCTTTTGAGGAGCTGTGCCTTCACA
ACTCAGTTTTGAGTCCTTGGTTCAAATTTGAGTTCAGTTATTCTTTTCTCATATATAAAAATCC
AAATAGTTAATTCCGCCAAGGTGTTATAGAGAAGTCCTTTTGCCTTTTTTGGAAACAAAATTCT
GGTGGGGGTCGAAATTGGATTTTTGCAGCAGAGCATTCATACCCATGATTTTTTTGCTCTCTCC
CAGGCACAGACAATGGAGATGATGTATCGTATAATTGCACAAGAGCTCAAGGCCATGAATATTA
AGAATGCACACCCTCAAGATTACTTGAACTTCTATTGTCTGGGCAATCGAGAAGAATCATCATC
ATCAAATGGCAGCCCTGAATCTAACGATAAAAGTGCAGCG
Conservation Information
Conserved circRNAs NA
PMCS 0.341252736
Functional Information
Coding potential Y
Potential coding position 21393545-21396451(+)
21393587-21396418(-)
21393640-21396384(-)
Potential amino acid sequence MATHDEETRKFFKHSSVICVLSPRYASSKLSIFKQQVVGTLFTHHQKCVLVDTQAWGNKRKITA
FIGGLDLCDGRYDTPEHRLFKDLDTVFDNDYHNPTFPSGAKGGPRQPWHDLHCRIDGPAAYDVL
KNFEQRWRKATKWRERFRKVSHWKDDALIKLERISWILSPSPTIPNDDISLRVSKEEDPENWHV
QVFRSIDSGSLKGFPSDCKEASKQNLICRKDLIIDKSIHTAYVRAIRSAQHFIYIENQYFLGSS
YAWPSYVNSGADNLVPIELALKIASKIRAGERFAVYVVIPMWPEGVPTAASVQEILFFQTMEMM
YRIIAQELKAMNIKNAHPQDYLNFYCLGNREESSSSNGSPESNDKSAAGGVMATHDEETRKFFK
HSSVICVLSPRYASSKLSIFKQQVVGTLFTHHQKCVLVDTQAWGNKRKITAFIGGLDLCDGRYD
TPEHRLFKDLDTVFDNDYHNPTFPSGAKGGPRQPWHDLHCRIDGPAAYDVLKNFEQRWRKATKW
RERFRKVSHWKDDALIKLERISWILSPSPTIPNDDISLRVSKEEDPENWHVQVFRSIDSGSLKG
FPSDCKEASKQNLICRKDLIIDKSIHTAYVRAIRSAQHFIYIENQYFLGSSYAWPSYVNSGADN
LVPIELALKIASKIRAGERFAVYVVIPMWPEGVPTAASVQEILFFQTMEMMYRIIAQELKAMNI
KNAHPQDYLNFYCLGNREESSSSNGSPESNDKSAAGGVMATHDEETRKFFKHSSVICVLSPRYA
SSKLSIFKQQVVGTLFTHHQKCVLVDTQAWGNKRKITAFIGGLDLCDGRYDTPEHRLFKDLDTV
FDNDYHNPTFPSGAKGGPRQPWHDLHCRIDGPAAYDVLKNFEQRWRKATKWRERFRKVSHWKDD
ALIKLERISWILSPSPTIPNDDISLRVSKEEDPENWHVQVFRSIDSGSLKGFPSDCKEASKQNL
ICRKDLIIDKSIHTAYVRAIRSAQHFIYIENQYFLGSSYAWPSYVNSGADNLVPIELALKIASK
IRAGERFAVYVVIPMWPEGVPTAASVQEILFFQTMEMMYRIIAQELKAMNIKNAHPQDYLNFYC
LGNREESSSSNGSPESNDKSAAGGVMATHDEETRKFFKHSSVICVLSPRYASSKLSIFKQQVVG
TLFTHHQKCVLVDTQAWGNKRKITAFIGGLDLCDGRYDTPEHRLFKDLDTVFDNDYHNPTFPSG
AKGGPRQPWHDLHCRIDGPAAYDVLKNFEQRWRKATKWRERFRKVSHWKDDALIKLERISWILS
PSPTIPNDDISLRVSKEEDPENWHVQVFRSIDSGSLKGFPSDCKEASKQNLICRKDLIIDKSIH
TAYVRAIRSAQHFIYIENQYFLGSSYAWPSYVNSGADNLVPIELALKIASKIRAGERFAVYVVI
PMWPEGVPTAASVQEILFFQTMEMMYRIIAQELKAMNIKNAHPQDYLNFYCLGNREESSSSNGS
PESNDKSAA(+)
MLEEFSSFFIMCRHHSTRCTFIVRFRAAI*(-)
MLSLLLAYRGERTQMTEECLKNFLVSSSCVAITPPAALLSLDSGLPFDDDDSSRLPRQ*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017