Detailed infomation of each circRNA
| General Information | |
|---|---|
| CircRNA Name | Os09g0543100_circ_g.5 |
| ID in PlantcircBase | osa_circ_040083 |
| Alias | NA |
| Organism | Oryza sativa |
| Position | chr9: 21393535-21396454 JBrowse» |
| Reference genome | IRGSP-1.0.38 |
| Type | e-circRNA |
| Identification method | CIRCexplorer, PcircRNA_finder |
| Parent gene | Os09g0543100 |
| Parent gene annotation |
Similar to predicted protein. (Os09t0543100-01);Similar to Phosp holipase D nu-2 (Fragment). (Os09t0543100-02);Similar to predict ed protein. (Os09t0543100-03) |
| Parent gene strand | + |
| Alternative splicing | Os09g0543100_circ_g.2 Os09g0543100_circ_g.3 Os09g0543100_circ_g.4 Os09g0543100_circ_g.6 Os09g0543100_circ_g.7 Os09g0543100_circ_g.8 Os09g0543100_circ_g.9 Os09g0543100_circ_g.10 |
| Support reads | 1 |
| Tissues | seed |
| Exon boundary | Yes-Yes |
| Splicing signals | GT-AG |
| Number of exons covered | Os09t0543100-02:7 Os09t0543100-01:1 |
| Conservation Information | |
|---|---|
| Conserved circRNAs | NA |
| PMCS | 0.341252736 |
| Functional Information | |
|---|---|
| Coding potential | Y |
| Potential coding position |
21393545-21396451(+) 21393587-21396418(-) 21393640-21396384(-) |
| Potential amino acid sequence |
MATHDEETRKFFKHSSVICVLSPRYASSKLSIFKQQVVGTLFTHHQKCVLVDTQAWGNKRKITA FIGGLDLCDGRYDTPEHRLFKDLDTVFDNDYHNPTFPSGAKGGPRQPWHDLHCRIDGPAAYDVL KNFEQRWRKATKWRERFRKVSHWKDDALIKLERISWILSPSPTIPNDDISLRVSKEEDPENWHV QVFRSIDSGSLKGFPSDCKEASKQNLICRKDLIIDKSIHTAYVRAIRSAQHFIYIENQYFLGSS YAWPSYVNSGADNLVPIELALKIASKIRAGERFAVYVVIPMWPEGVPTAASVQEILFFQTMEMM YRIIAQELKAMNIKNAHPQDYLNFYCLGNREESSSSNGSPESNDKSAAGGVMATHDEETRKFFK HSSVICVLSPRYASSKLSIFKQQVVGTLFTHHQKCVLVDTQAWGNKRKITAFIGGLDLCDGRYD TPEHRLFKDLDTVFDNDYHNPTFPSGAKGGPRQPWHDLHCRIDGPAAYDVLKNFEQRWRKATKW RERFRKVSHWKDDALIKLERISWILSPSPTIPNDDISLRVSKEEDPENWHVQVFRSIDSGSLKG FPSDCKEASKQNLICRKDLIIDKSIHTAYVRAIRSAQHFIYIENQYFLGSSYAWPSYVNSGADN LVPIELALKIASKIRAGERFAVYVVIPMWPEGVPTAASVQEILFFQTMEMMYRIIAQELKAMNI KNAHPQDYLNFYCLGNREESSSSNGSPESNDKSAAGGVMATHDEETRKFFKHSSVICVLSPRYA SSKLSIFKQQVVGTLFTHHQKCVLVDTQAWGNKRKITAFIGGLDLCDGRYDTPEHRLFKDLDTV FDNDYHNPTFPSGAKGGPRQPWHDLHCRIDGPAAYDVLKNFEQRWRKATKWRERFRKVSHWKDD ALIKLERISWILSPSPTIPNDDISLRVSKEEDPENWHVQVFRSIDSGSLKGFPSDCKEASKQNL ICRKDLIIDKSIHTAYVRAIRSAQHFIYIENQYFLGSSYAWPSYVNSGADNLVPIELALKIASK IRAGERFAVYVVIPMWPEGVPTAASVQEILFFQTMEMMYRIIAQELKAMNIKNAHPQDYLNFYC LGNREESSSSNGSPESNDKSAAGGVMATHDEETRKFFKHSSVICVLSPRYASSKLSIFKQQVVG TLFTHHQKCVLVDTQAWGNKRKITAFIGGLDLCDGRYDTPEHRLFKDLDTVFDNDYHNPTFPSG AKGGPRQPWHDLHCRIDGPAAYDVLKNFEQRWRKATKWRERFRKVSHWKDDALIKLERISWILS PSPTIPNDDISLRVSKEEDPENWHVQVFRSIDSGSLKGFPSDCKEASKQNLICRKDLIIDKSIH TAYVRAIRSAQHFIYIENQYFLGSSYAWPSYVNSGADNLVPIELALKIASKIRAGERFAVYVVI PMWPEGVPTAASVQEILFFQTMEMMYRIIAQELKAMNIKNAHPQDYLNFYCLGNREESSSSNGS PESNDKSAA(+) MLEEFSSFFIMCRHHSTRCTFIVRFRAAI*(-) MLSLLLAYRGERTQMTEECLKNFLVSSSCVAITPPAALLSLDSGLPFDDDDSSRLPRQ*(-) |
| Sponge-miRNAs | NA |
| circRNA-miRNA-mRNA network | VISUALIZATION |
| Potential function description | NA |
| Other Information | |
|---|---|
| References | Chu et al., 2017 |