Detailed infomation of each circRNA
General Information | |
---|---|
CircRNA Name | Zm00001d023640_circ_g.4 |
ID in PlantcircBase | zma_circ_010166 |
Alias | Zm10circ00012, GRMZM2G303655_C2 |
Organism | Zea mays |
Position | chr10: 13323882-13324639 JBrowse» |
Reference genome | AGPv4.38 |
Type | u-circRNA |
Identification method | CIRI2 |
Parent gene | Zm00001d023640 |
Parent gene annotation |
Ubiquitin carboxyl-terminal hydrolase 13 |
Parent gene strand | - |
Alternative splicing | Zm00001d023640_circ_g.1 Zm00001d023640_circ_g.2 Zm00001d023640_circ_g.3 Zm00001d023640_circ_g.5 Zm00001d023640_circ_g.6 |
Support reads | NA |
Tissues | leaf, endosperm |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Zm00001d023640_T015:4 Zm00001d023640_T004:4 Zm00001d023640_T023:3 Zm00001d023640_T032:4 Zm00001d023640_T033:4 Zm00001d023640_T022:4 Zm00001d023640_T005:4 Zm00001d023640_T008:4 Zm00001d023640_T001:4 Zm00001d023640_T034:4 Zm00001d023640_T018:4 Zm00001d023640_T012:4 Zm00001d023640_T024:4 Zm00001d023640_T011:4 Zm00001d023640_T028:4 Zm00001d023640_T020:4 Zm00001d023640_T003:4 Zm00001d023640_T006:4 Zm00001d023640_T021:4 Zm00001d023640_T013:4 Zm00001d023640_T009:4 Zm00001d023640_T043:4 Zm00001d023640_T042:4 Zm00001d023640_T044:4 Zm00001d023640_T014:4 Zm00001d023640_T007:4 Zm00001d023640_T019:4 Zm00001d023640_T016:4 Zm00001d023640_T017:4 Zm00001d023640_T002:4 Zm00001d023640_T010:4 |
Conservation Information | |
---|---|
Conserved circRNAs | NA |
PMCS | 0.184222845 |
Functional Information | |
---|---|
Coding potential | Y |
Potential coding position |
13324424-13323882(+) 13324225-13323884(-) |
Potential amino acid sequence |
MSSLLFSGGRIGHNSGPSSTSRNSFSSALCALFETSLSCPT*(+) MAGFSPNEEIELYEEIKFEPNVMCEHIDKKLTFRSSQVGQLREVSNKAHNAELKLFLEVELGPE LCPIRPPEKSKEDILLFFKLYNAEKEELHFVGRLFVKALGKPSEILTKLNAMAGFSPNEEIELY EEIKFEPNVMCEHIDKKLTFRSSQVGQLREVSNKAHNAELKLFLEVELGPELCPIRPPEKSKED ILLFFKLYNAEKEELHFVGRLFVKALGKPSEILTKLNAMAGFSPNEEIELYEEIKFEPNVMCEH IDKKLTFRSSQVGQLREVSNKAHNAELKLFLEVELGPELCPIRPPEKSKEDILLFFKLYNAEKE ELHFVGRLFVKALGKPSEILTKLNAMAGFSPNEEIELYEEIKFEPNVMCEHIDKKLTFRSSQ(- ) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
---|---|
References | Han et al., 2020;Zhang et al., 2019 |