Detail information of Zm00001d023640_circ_g.3


General Information
CircRNA Name Zm00001d023640_circ_g.3
ID in PlantcircBase zma_circ_003108
Alias circ09
Organism Zea mays
Position chr10: 13323881-13328540  JBrowse»
Reference genome AGPv4.38
Type   ui-circRNA
Identification method KNIFE
Parent gene Zm00001d023640
Parent gene annotation Ubiquitin carboxyl-terminal hydrolase 13
Parent gene strand -
Alternative splicing Zm00001d023640_circ_g.1 Zm00001d023640_circ_g.2 Zm00001d023640_circ_g.4 Zm00001d023640_circ_g.5 Zm00001d023640_circ_g.6
Support reads NA
Tissues seedling leaves
Exon boundary   No-Yes
Splicing signals   CT-AA
Number of exons covered Zm00001d023640_T033:9
Zm00001d023640_T020:9
Zm00001d023640_T022:9
Zm00001d023640_T043:9
Zm00001d023640_T006:9
Zm00001d023640_T012:8
Zm00001d023640_T009:9
Zm00001d023640_T004:9
Zm00001d023640_T007:9
Zm00001d023640_T024:8
Zm00001d023640_T013:8
Zm00001d023640_T011:9
Zm00001d023640_T005:9
Zm00001d023640_T017:9
Zm00001d023640_T002:9
Zm00001d023640_T015:8
Zm00001d023640_T019:9
Zm00001d023640_T044:9
Zm00001d023640_T034:9
Zm00001d023640_T003:9
Zm00001d023640_T021:9
Zm00001d023640_T018:9
Zm00001d023640_T014:9
Zm00001d023640_T001:9
Zm00001d023640_T008:8
Zm00001d023640_T032:9
Zm00001d023640_T010:9
Zm00001d023640_T023:3
Zm00001d023640_T042:9
Zm00001d023640_T016:9
Zm00001d023640_T028:9
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATTTGTCATAAAGAATGTTACCTCTTCCTCACCCCCATACTGCTCTTCAAGTGCCTTTTTAGTG
TCTTCTTTTGTAACCCGCTCATCATCAAATTTGTACcctgactagagcggaaagtaagtttctt
gtcaatatgttcgcacatcacatttggctcaaacttaatttcctgcagaataagaatgtcaaaa
gcatcaga
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTGACTAGAGCGGAAAGTAAGTTTCTTGTCAATATGTTCGCACATCACATTTGGCTCAAACTT
AATTTCCTGCAGAATAAGAATGTCAAAAGCATCAGAATATTCAACTTGGGAAGATCATCACGAC
ATCGTTAAGTGCACAACATTTTACTACATTAAATTAATTATTGAGCAGGATACACTCGAACAAT
CAAGGACTTTAACAGATTTTATGAGCACAAGGAGCACATAGGCAGAAAACATGCATACAGCAAG
TTAGAATGTGTACTCTAGAGAAATAAATACAGAATTGTGAAGCACCTCGTACAGCTCAATTTCT
TCATTTGGAGAAAATCCAGCCATTGCATTCAGTTTTGTCAATATTTCAGATGGCTTTCCCAGAG
CCTTCACAAAAAGCCTACCAACAAAACTGTAACAGCAGAGGATGTCGACATGTGTGTCATCTCT
AATAGAAGTTCAACAGAATGATTGACAAATAGATTAACATGAAACATACTGAAGCTCTTCCTTC
TCAGCATTATAAAGCTTGAAGAAAAGAAGTATGTCTTCTTTGCTCTTCTCAGGTGGACGAATTG
GACATAACTCCTATATAATTAATAATTAGAAACAACCAAGCATCTCAAAATCTAGAAGGCATAA
ACAAGAGGGAAAATAAAAGACAAATAAAAATAACATTTTACCGGTCCAAGTTCAACTTCCAGAA
ACAGCTTCAGCTCAGCATTGTGTGCCTTATTTGAGACTTCCCTAAGCTGCCCGACCTGTGCAAT
GAAAGAAAGAAATTAAAATGACAAACGAATTGGCATAAATTAAAGAAGTAAAAAGGCTAAGATA
TGATGCATACTCCCTCCGGTGTCCTATTATTTGTTGTTTAGGACAACGACATGGTCTCCAAAAT
ATAGTTTTGACCAATGTTTTTTTAATACAATAAACTCTTAATACATTTATACTTTTATTAAAAT
ACTTTTTAAGATAAATCGGTGCATATAAATATTAAGTTTCAAAACTGAATAACAAAATAATTAT
TTGTAGTCAAAATTTTATAAGTTTGACTCAAACCTTGTCCAAAACGACAAATAATAGGACACCG
GAGGGAGTATTATTTTTTCACTATTTCTGAAATATTGCCACGTGATGACGTGAATACATCACTA
TTGTTGTTATGGTCGCTAGATCGGTGAGGGATTAGAGAGGGAATTCGATGGTTGGGGTTGCTTG
ATCGCTAGATCGGTAAGGGATTGGAGGGGATATCGATGGGCAGGAATGCCGGCCGGGGGCCTCT
GCCCACGGCCGAGCAAGAGGGGGGTTTCTCCCTTCTAATTCTTGCCTGCTTTATTTCTCATCCA
TTGATTACATAAATAGGCCGGCTGGCCGCCTCTATCTAGCTAGAGATCCTTATCTCCTAAAAAC
TCTCAACAAACTACTAACTGATAACCTTCCTAGATAATCTCAACTAATCTCCTAAATAATCTCA
ACTAATCTTCTAATCTTATCTCTAACTATCCTTATCTAATCGTCCTTGGCGGGCCCATGGTTGC
TGCTGCCGCAGCCCCTCCATGGGCCTCCTTAGGCCCTGACACTACACCCCTCCTGGACAAGCAG
CTCGTCCTCGAGCTGCAACATGACGGGTGCTCAAAGACCGAGTCTATTTGACCCAAAACCAGAC
ACCTAGAAGACAAGCCTTTTACATCTCGGCTTATCTTATTATTCCGAATCTATTTTTTTTGACC
CCATAAGATAAGGCGGACACCCTCCACGCATTGGACTTACACGTGTGCAGCCACCTGGATCCCA
TGGACGCCATCTGGATGAAAGGGGAGCACATGGACAGGCACCTAGAGTAGGTCGCAACAATAAC
CAGTGGAGCCGCCCTCGTGGCGGCCGGTAGCGGAATGTGGTGGCGCTAAATAGTGCGCCCTTGT
CGATGACGAGGGGAGTGCCTTCCCTACCGCCGCTGCCGTAGAGTTGAAGTTCGTCGCCCGCGGG
ACACGTACCATGCTCGCACTTGGAGATAGCGGCCCGGTGCCGCTGTTGATAGCCGTCCGACAGG
GCGAGGTCGCGCCCCCGTGTCGAGGTCAACCGTCACCAAGGCTGCCTCGAGCATCTGCCGGCGC
ATCTCCCGCACTCTCCATCGTGCAAGGAAGCCACGAGCAGCAGCTTGTATGCCCACAGTCGCCG
ACGTCTGTAGCCGTGCGGACAACGCCAGCTGGTGCTGCTCATGTTGCACTGCTACCTTGATTTG
CAGTAGCCCTTGCTCAACCTTCTGGAGCGTGGCTTGCATCTTTTCGAGATCAGCCCTTATGTTG
GTCCACAAGTCCCCCATCGATGGAGCTGGTGATTGCTGAGCTGTGGCTGCCCCTAGTGGCGTCG
CCCATGGGGACGGAGACGCCGTCAACGAAGATGATGTGGCGAAATTTGGCGTTGTACCTAGAGA
TGGGCACGCCGACGTCCAGGATGTGGTGACAAAATTGGCAGACGATGCTGCCCATGGAGATGGG
GACGCCGGTTGCCAGGATGGCGTGACGAAGGTGGCATACGGCGCAGCCCATGGAGATGGGGACG
TCGATTGCCAGGACGGCGCGACGAAGGTGACATGCGGCGCAGTCCATGGAGATGGAGACGCCGG
TTGCCAGGATGACGCCGCGAAATTGGTAGCAGAAGTCATGGGATCAGATCGAAACCCAAGCTAG
CCGATACCAGTTGTTATGGTCGGTAGATCGGTGAGGGATTGGACAGGGCTATCGATGGACAGGA
ATGCCGGCCGGGGGCCTCTACCCACGGCCGAGCAAGAGGGGGGTTTCTCCCTTCTAATTCTTGC
CTGCTTTATTTCTCATCCATTGATTACATAAATAGGCCGGCTGGCCGCCTCTATCTAGCTAGAG
ATCCTTATCTCCTAAAAACTCTCAACAAACTACTAACTGATAACCTTCCTAGATAATCTCAACT
AATCTCCTAAATAATCTCAACTAATCTTCTAATCTTATCTCTAACTATCCTTATCTAATCGTCC
TTGGCGGGCCCATGGTTGCTGCTGCCGCAGCCCCTCCATGGGCCTCCTTAGGCAATTGTCTACT
ACAATAATACTAGTATTCTACATTCAACAAATTCAACCAAACTTATAGATCAAGAGTTCAAATA
AACTAATGCTACATGTTACATGTAAGCAAATCTGAAACGTTAAGAAATGCACACAACTTCTCTT
GTCCTCAAATTGCAAGTTAAGATATGCACACAAGTTCTCTTGTCCTCAAATTGCAAGTGACATG
TGAAGGTAGAACTTGTAAGTGATATTAGAAAATAAAAAAAGATACATTTTTTTCTCATAAGAAT
GGTAAAAGCGAACACAAAATTAAAAAAGGATAAACAGAAGAAATGAAAATAAAACTTAACATCA
GTTGAACATCAAAAGTGATGAACCAAACTGTATTCCACATATTTAAGTACTTTTTAAGTATTAT
AAGTGTGAACTTCTAAAAACAATAAATGACTCACTGATTGTGCTTCCTCATGGGGTGTCAATGG
ACGATTGGGCCGGTATGTATGGTTCTGCCTCTTAGCCCACAACCAGAAGCGCTGAAACTGTACA
GGGATGCCAAATTCCTTTGCAACTTCCTCCTGAACAGTTCATTTGAATATCAAATCAGACTACC
AAAATAAATGGTCACTAACTCACTGTTATAGCTTCAGATTATAGAGCGCAACTAGAAAATTAAT
GAAATCTAGAATGCAGTAATAGAATGTTCCAAAGTGGTAATGAAAACCATTAATCAGCCAGACT
ATAAAGCAAGTTTGCTGACTATTTCTGGTAGGTGTCCATTTTAATTTTTTAAGATAGAATTGCA
ACAGAATAGGACTGTAGCAGCTCAATCTCTTACAAAGAGGACTGTAGTATCCAAAAATCATAAC
CATGAAGCCATGGTTTAAATAAACATGTAGGGTTTTTTGGGCCAATACCTTGAATGAAGTAAAA
GGCAACTGCTTCTGAATGCGGAAACTGTGAACTTTTTCATGGTCCACCAGATCAAAATATATAT
TCTTACCGATTTGCTCCTTTAAGTCCTCGTCTCGAGCGATCTATTTTCATTTTTACACAAAAAG
TTCTATCAAGAGGAGTCACCAAGAGAGAACTTAGGCACTTAGCTGCTGGTATGACTGAAACAAG
ATCAGACCTTTATGATAGTGTAGAGATGAGCTTCAGCCTTCTCCTTCTTCTTGTGTTCTTTCTC
TTCTTGTTCTTTCTTCAACCTTATCTGTAAAAGAATAGTTCAATCAATCACTATCTTCAACAAA
AATACAAGATGATACAAAGAAAAGTGGGAAAGTATACAGGAACTACCGAACTACTTACCCGCAA
ATGCTCAGCGATGTCCTTCTCATCGACATTACACATTATTTTCTCTTTGTCACTCTCACGTATA
TAGACAAGCATGTAGGCATTCGAATACTTTGTGAATTTAAATGGCGTGTTATTGAAACCAGGGT
TTATTTGAGGCAACTGTTCCATACAAAGAAGAAATAAGAGGAAAGTTAATACAAGTCCGCAAGT
ATTGTATTGAATGAACATTTGTCATAAAGAATGTTACCTCTTCCTCACCCCCATACTGCTCTTC
AAGTGCCTTTTTAGTGTCTTCTTTTGTAACCCGCTCATCATCAAATTTGTAC
Conservation Information
Conserved circRNAs NA
PMCS 0.01474095
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chen et al., 2017b