Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d023640_circ_g.5 |
ID in PlantcircBase | zma_circ_006061 |
Alias | embryosac_test_circ_001149 |
Organism | Zea mays |
Position | chr10: 13327370-13329231 JBrowse» |
Reference genome | AGPv4.38 |
Type | ui-circRNA |
Identification method | find_circ |
Parent gene | Zm00001d023640 |
Parent gene annotation |
Ubiquitin carboxyl-terminal hydrolase 13 |
Parent gene strand | - |
Alternative splicing | Zm00001d023640_circ_g.1 Zm00001d023640_circ_g.2 Zm00001d023640_circ_g.3 Zm00001d023640_circ_g.4 Zm00001d023640_circ_g.6 |
Support reads | NA |
Tissues | embryo sac |
Exon boundary | No-Yes |
Splicing signals | CT-CA |
Number of exons covered | Zm00001d023640_T004:6 Zm00001d023640_T043:6 Zm00001d023640_T028:6 Zm00001d023640_T001:6 Zm00001d023640_T042:6 Zm00001d023640_T002:6 Zm00001d023640_T010:6 Zm00001d023640_T014:6 Zm00001d023640_T005:6 Zm00001d023640_T033:6 Zm00001d023640_T006:6 Zm00001d023640_T008:5 Zm00001d023640_T011:6 Zm00001d023640_T034:6 Zm00001d023640_T019:6 Zm00001d023640_T020:6 Zm00001d023640_T021:6 Zm00001d023640_T013:5 Zm00001d023640_T015:5 Zm00001d023640_T003:5 Zm00001d023640_T012:5 Zm00001d023640_T044:6 Zm00001d023640_T024:4 Zm00001d023640_T022:6 Zm00001d023640_T018:6 Zm00001d023640_T016:6 Zm00001d023640_T009:6 Zm00001d023640_T007:5 Zm00001d023640_T017:6 Zm00001d023640_T032:6 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.014008136 |
Functional Information | |
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Coding potential | N |
Potential coding position |
NA |
Potential amino acid sequence |
NA |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Tang et al., 2018 |