Detail information of Os11g0620150_circ_g.2


General Information
CircRNA Name Os11g0620150_circ_g.2
ID in PlantcircBase osa_circ_009817
Alias NA
Organism Oryza sativa
Position chr11: 24171650-24174028  JBrowse»
Reference genome IRGSP-1.0.38
Type   u-circRNA
Identification method CIRCexplorer
Parent gene Os11g0620150
Parent gene annotation Hypothetical gene. (Os11t0620150-01)
Parent gene strand +
Alternative splicing Os11g0620150_circ_g.1 Os11g0620150_circ_g.3
Support reads 1
Tissues shoot
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os11t0620100-01:9
Os11t0620100-03:7
Os11t0620150-01:9
Os11t0620100-01:9
Os11t0620100-03:7
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTCCTTCCTGATGAGCTTGCATCCTTCTACTGGACCAATACTTTGGAAGACCTCATGTAGCAGT
GAATCCGTCACTTGAAGATGGATATTGCCAACATACcttgatctgcctaccgccaataagttgt
ccattaccagtctgaattgctagagcagcttcttcatgggtgctgtaacgcacaaagccaaaac
ctttatca
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTGATCTGCCTACCGCCAATAAGTTGTCCATTACCAGTCTGAATTGCTAGAGCAGCTTCTTCA
TGGGTGCTGTAACGCACAAAGCCAAAACCTTTATCACGCGTTACACGCACCTCCTCAATTGAAC
CAACCCCAAGTGAATGGAAAAATCTGTGCACATCATTGCTGTTGACCTAGTAAATATAAGAGGC
AGAAACGTTACTGGTATGGAAAAACAACAAAATACAGCACAAAACAAAAAGAAATTTGTTTCAG
AAATGGGAGAGGTTACATCATGAGGAAGATTGCCAACATAAACAGTCGTGTACTGTGGGTTGTT
TTCAGGACCATCTTCATTTGCATTATCCTTTCCACCTTCTGCATAAAAAAGAACATGGAATACT
TTACAGTTCAGTACTTTCTAGCCATTTAACAGAGCTCTTGCTCAGTTGATTGTTACATTACATA
TTACAATCATGTATTGACTTAAACCAAAACAAGTGGGCCAGGACAAAAGGCATGTATATTCACC
TGATGAACCATTTGTCAACTCTATCATACCCTTGGAGTCTGTATTTTGTTTCTCTTCACCAGCA
TTAGCACCCTTTGTTGCCCAATTGCAACGAACTTGACGGTTGCCGAGCCACTTCCCTGAAGCAA
TGAAAAGTAAGCAGAAATGATCAGGTAGCTAGAACTAACCTAATGACTAGTGAGGCATGGCAAC
AAACATGGAAAAAGACTCACCATTCAGTTCATTTATGGCATTTTGTGCGTCCTGTCAATGAATA
ACAAAGATGATCAATCAGCACCGCACCAAAAAAAAGTACAAATAAATAAAAATTAAACTGTCAC
AATGACACTACCTGCTGATTTCTGAAAGAAACAAAACCAAAACCTCTGGATCGTCCAGTTTTCT
GATCCCACATTACCCTAGCATCTCTGGAAAAAAAATACATATGGGTAAGAAAGAAAATGCATAA
TCTTGAACAACTGGTAAAATACCCTTCCGATAAAATGTCGCAGCTAGCAGAGTGAGAACTGGAA
AAAAAAAATACACACAGATACGTGAAACACTTACGAGCAACTGGTAAATCCAGCGAAAAAAGCA
AACAAAGCAGCATCTGTTACTTCCGGGCAAAGATCGCCAACAAAAATATTAAAATGGCCTGCAA
GAATGAACAGACATCAGCAAAGCTCAATTTTAATAACTCAGATTCACATGTACACAGACAGTAC
AGAACAATAATTGCAAAAGAACATTTAACAGTTTTTCAGTTCCCAACCTGATGTATCCTCTCTT
TGAGTACTTGCATATGCCCAATTGACTTTTATTGGCTGGCCAAACCTGGTAATGTAGGATCATA
AGAAAATGTTGGAAAATGTTAAGAGGAAAAGCAAAATATTAGAATTTATATATATTATAATACT
ATAGTATTGAAATACTTACAATTGTCTACCGTTGAGTGATACAATTGCAATTGCAGCAGATCTA
CGGTCATAATAGTCAACAAAACCAAAGGATGACTGCGAGATTTAATACAAAAAAGGAAATCATA
TAAGCACATGTATATAAAAAGTGTACGGCTCAGCCAAACCTAAGAAGTTAATTACATTAAATCT
GCTGAAAACATTTAGCCACTTAAACAAACTGATGCATCACATTGAAGCTTTCTCAAGAGAGATC
AATACTGTAGTTAGTAACATAATAATTGAATGAATTTAGCTGTCTGGCCTATGTGAATAACATA
GCAAACATTTTGAAACTTCCTTGTTCAGAATTACGGCATTTGTGCTAGCCTATCCTTACTATGA
AATTCAACTGAATAAAATACTCCAAAATAGTCACTCCAGCATCATCACTATAGCTCTAGTGTTA
ACCATTATGCTGAAAAATAAACTCTTGTATACATTTGAACTATGGTTCACTATAACAGATTTGC
ATAAGTCATATCATGTACAAGTTGTTTGATGATATCGGTATATCACGCTTATGGTACTGGGCAG
TGTCATACTGTCTTATAGTTATTATCAAGTTTTAAAAATACAGTATGCGAATGAAAAATGAAAT
TCATTCAATGACAGATTTCAGTAACTATCAGTTTAGTTAATTAATTAAGGGATTAGGGGCGGGT
ATGCATGTGCTTTTCTATGGAGATCGATAAAATACTCAGAACATCCCAAACGATAAAAATGCCT
TCAACTAGCAACATTTACAAGGATACAAAAGGATCTAGCGAAAACAGTATAGATAATATTTTTT
TTGTTAGGTTTGTCTCAAAGAGCAAAGATTCCACACCTTTTCCTTCCTGATGAGCTTGCATCCT
TCTACTGGACCAATACTTTGGAAGACCTCATGTAGCAGTGAATCCGTCACTTGAAGATGGATAT
TGCCAACATAC
Conservation Information
Conserved circRNAs NA
PMCS 0.124674205
Functional Information
Coding potential Y
Potential coding position 24172557-24173983(-)
24171683-24173983(-)
Potential amino acid sequence MWDQKTGRSRGFGFVSFRNQQDAQNAINELNGKWLGNRQVRCNWATKGANAGEEKQNTDSKGMI
ELTNGSSEGGKDNANEDGPENNPQYTTVYVGNLPHDVNSNDVHRFFHSLGVGSIEEVRVTRDKG
FGFVRYSTHEEAALAIQTGNGQLIGGRQIKVCWQYPSSSDGFTAT*(-)
MDNLLAVGRSRYVGNIHLQVTDSLLHEVFQSIGPVEGCKLIRKEKSSFGFVDYYDRRSAAIAIV
SLNGRQLFGQPIKVNWAYASTQREDTSGHFNIFVGDLCPEVTDAALFAFFAGFTSCSDARVMWD
QKTGRSRGFGFVSFRNQQDAQNAINELNGKWLGNRQVRCNWATKGANAGEEKQNTDSKGMIELT
NGSSEGGKDNANEDGPENNPQYTTVYVGNLPHDVNSNDVHRFFHSLGVGSIEEVRVTRDKGFGF
VRYSTHEEAALAIQTGNGQLIGGRQIKVCWQYPSSSDGFTAT*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017