Plant Circular RNA Database

Detail information of Os11g0620150_circ_g.3

			
						 General Information
					
						CircRNA Name
						Os11g0620150_circ_g.3
					
						ID in PlantcircBase
						osa_circ_009818
					
						Alias
						NA
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr11: 24171650-24174334  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							u-circRNA							
									
						Identification method
						CIRCexplorer, KNIFE, PcircRNA_finder
					
						Parent gene
						
							Os11g0620150						
					
						Parent gene annotation
						
							Hypothetical gene. (Os11t0620150-01)
							
						Parent gene strand
						+
					
						Alternative splicing
						
							Os11g0620150_circ_g.1 Os11g0620150_circ_g.2 						
					
						Support reads
						1
					
						Tissues
						root, seed
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os11t0620100-01:10
Os11t0620100-03:7
Os11t0620150-01:10
Os11t0620100-01:10
Os11t0620100-03:7

General Information
CircRNA Name	Os11g0620150_circ_g.3
ID in PlantcircBase	osa_circ_009818
Alias	NA
Organism	Oryza sativa
Position	chr11: 24171650-24174334 JBrowse»
Reference genome	IRGSP-1.0.38
Type	u-circRNA
Identification method	CIRCexplorer, KNIFE, PcircRNA_finder
Parent gene	Os11g0620150
Parent gene annotation	Hypothetical gene. (Os11t0620150-01)
Parent gene strand	+
Alternative splicing	Os11g0620150_circ_g.1 Os11g0620150_circ_g.2
Support reads	1
Tissues	root, seed
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os11t0620100-01:10 Os11t0620100-03:7 Os11t0620150-01:10 Os11t0620100-01:10 Os11t0620100-03:7

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							TGGGCATAAACAGGGCAAAACAGGTGACAAATACTTACACACTCCGGCATGTACTTGAATCAAA
TCCAGGAGGCAGGTTGCCACTAACAATGGGCTCTATcttgatctgcctaccgccaataagttgt
ccattaccagtctgaattgctagagcagcttcttcatgggtgctgtaacgcacaaagccaaaac
ctttatca

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							CTTGATCTGCCTACCGCCAATAAGTTGTCCATTACCAGTCTGAATTGCTAGAGCAGCTTCTTCA
TGGGTGCTGTAACGCACAAAGCCAAAACCTTTATCACGCGTTACACGCACCTCCTCAATTGAAC
CAACCCCAAGTGAATGGAAAAATCTGTGCACATCATTGCTGTTGACCTAGTAAATATAAGAGGC
AGAAACGTTACTGGTATGGAAAAACAACAAAATACAGCACAAAACAAAAAGAAATTTGTTTCAG
AAATGGGAGAGGTTACATCATGAGGAAGATTGCCAACATAAACAGTCGTGTACTGTGGGTTGTT
TTCAGGACCATCTTCATTTGCATTATCCTTTCCACCTTCTGCATAAAAAAGAACATGGAATACT
TTACAGTTCAGTACTTTCTAGCCATTTAACAGAGCTCTTGCTCAGTTGATTGTTACATTACATA
TTACAATCATGTATTGACTTAAACCAAAACAAGTGGGCCAGGACAAAAGGCATGTATATTCACC
TGATGAACCATTTGTCAACTCTATCATACCCTTGGAGTCTGTATTTTGTTTCTCTTCACCAGCA
TTAGCACCCTTTGTTGCCCAATTGCAACGAACTTGACGGTTGCCGAGCCACTTCCCTGAAGCAA
TGAAAAGTAAGCAGAAATGATCAGGTAGCTAGAACTAACCTAATGACTAGTGAGGCATGGCAAC
AAACATGGAAAAAGACTCACCATTCAGTTCATTTATGGCATTTTGTGCGTCCTGTCAATGAATA
ACAAAGATGATCAATCAGCACCGCACCAAAAAAAAGTACAAATAAATAAAAATTAAACTGTCAC
AATGACACTACCTGCTGATTTCTGAAAGAAACAAAACCAAAACCTCTGGATCGTCCAGTTTTCT
GATCCCACATTACCCTAGCATCTCTGGAAAAAAAATACATATGGGTAAGAAAGAAAATGCATAA
TCTTGAACAACTGGTAAAATACCCTTCCGATAAAATGTCGCAGCTAGCAGAGTGAGAACTGGAA
AAAAAAAATACACACAGATACGTGAAACACTTACGAGCAACTGGTAAATCCAGCGAAAAAAGCA
AACAAAGCAGCATCTGTTACTTCCGGGCAAAGATCGCCAACAAAAATATTAAAATGGCCTGCAA
GAATGAACAGACATCAGCAAAGCTCAATTTTAATAACTCAGATTCACATGTACACAGACAGTAC
AGAACAATAATTGCAAAAGAACATTTAACAGTTTTTCAGTTCCCAACCTGATGTATCCTCTCTT
TGAGTACTTGCATATGCCCAATTGACTTTTATTGGCTGGCCAAACCTGGTAATGTAGGATCATA
AGAAAATGTTGGAAAATGTTAAGAGGAAAAGCAAAATATTAGAATTTATATATATTATAATACT
ATAGTATTGAAATACTTACAATTGTCTACCGTTGAGTGATACAATTGCAATTGCAGCAGATCTA
CGGTCATAATAGTCAACAAAACCAAAGGATGACTGCGAGATTTAATACAAAAAAGGAAATCATA
TAAGCACATGTATATAAAAAGTGTACGGCTCAGCCAAACCTAAGAAGTTAATTACATTAAATCT
GCTGAAAACATTTAGCCACTTAAACAAACTGATGCATCACATTGAAGCTTTCTCAAGAGAGATC
AATACTGTAGTTAGTAACATAATAATTGAATGAATTTAGCTGTCTGGCCTATGTGAATAACATA
GCAAACATTTTGAAACTTCCTTGTTCAGAATTACGGCATTTGTGCTAGCCTATCCTTACTATGA
AATTCAACTGAATAAAATACTCCAAAATAGTCACTCCAGCATCATCACTATAGCTCTAGTGTTA
ACCATTATGCTGAAAAATAAACTCTTGTATACATTTGAACTATGGTTCACTATAACAGATTTGC
ATAAGTCATATCATGTACAAGTTGTTTGATGATATCGGTATATCACGCTTATGGTACTGGGCAG
TGTCATACTGTCTTATAGTTATTATCAAGTTTTAAAAATACAGTATGCGAATGAAAAATGAAAT
TCATTCAATGACAGATTTCAGTAACTATCAGTTTAGTTAATTAATTAAGGGATTAGGGGCGGGT
ATGCATGTGCTTTTCTATGGAGATCGATAAAATACTCAGAACATCCCAAACGATAAAAATGCCT
TCAACTAGCAACATTTACAAGGATACAAAAGGATCTAGCGAAAACAGTATAGATAATATTTTTT
TTGTTAGGTTTGTCTCAAAGAGCAAAGATTCCACACCTTTTCCTTCCTGATGAGCTTGCATCCT
TCTACTGGACCAATACTTTGGAAGACCTCATGTAGCAGTGAATCCGTCACTTGAAGATGGATAT
TGCCAACATACCTATTCAGAACATCAATGGCAACCATAAGAAAGAATGAATGCAGAATATCTAG
CCAACAATGCAATGCTGCAAATAACGAAGAGAGCTCGATCCAGATCAGTGGATCAAGGGCACTC
TGCCCAAAGGCATAGCATTACCCAATCTAACTATTTCGTAATGTTGCGAAATAGAACCAAATCA
GTGAAACAACAGTAACAAAGTTCCTTGGGCATAAACAGGGCAAAACAGGTGACAAATACTTACA
CACTCCGGCATGTACTTGAATCAAATCCAGGAGGCAGGTTGCCACTAACAATGGGCTCTAT
						
					

			
		

Sequences
Splice junction sequence	TGGGCATAAACAGGGCAAAACAGGTGACAAATACTTACACACTCCGGCATGTACTTGAATCAAA TCCAGGAGGCAGGTTGCCACTAACAATGGGCTCTATcttgatctgcctaccgccaataagttgt ccattaccagtctgaattgctagagcagcttcttcatgggtgctgtaacgcacaaagccaaaac ctttatca
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	CTTGATCTGCCTACCGCCAATAAGTTGTCCATTACCAGTCTGAATTGCTAGAGCAGCTTCTTCA TGGGTGCTGTAACGCACAAAGCCAAAACCTTTATCACGCGTTACACGCACCTCCTCAATTGAAC CAACCCCAAGTGAATGGAAAAATCTGTGCACATCATTGCTGTTGACCTAGTAAATATAAGAGGC AGAAACGTTACTGGTATGGAAAAACAACAAAATACAGCACAAAACAAAAAGAAATTTGTTTCAG AAATGGGAGAGGTTACATCATGAGGAAGATTGCCAACATAAACAGTCGTGTACTGTGGGTTGTT TTCAGGACCATCTTCATTTGCATTATCCTTTCCACCTTCTGCATAAAAAAGAACATGGAATACT TTACAGTTCAGTACTTTCTAGCCATTTAACAGAGCTCTTGCTCAGTTGATTGTTACATTACATA TTACAATCATGTATTGACTTAAACCAAAACAAGTGGGCCAGGACAAAAGGCATGTATATTCACC TGATGAACCATTTGTCAACTCTATCATACCCTTGGAGTCTGTATTTTGTTTCTCTTCACCAGCA TTAGCACCCTTTGTTGCCCAATTGCAACGAACTTGACGGTTGCCGAGCCACTTCCCTGAAGCAA TGAAAAGTAAGCAGAAATGATCAGGTAGCTAGAACTAACCTAATGACTAGTGAGGCATGGCAAC AAACATGGAAAAAGACTCACCATTCAGTTCATTTATGGCATTTTGTGCGTCCTGTCAATGAATA ACAAAGATGATCAATCAGCACCGCACCAAAAAAAAGTACAAATAAATAAAAATTAAACTGTCAC AATGACACTACCTGCTGATTTCTGAAAGAAACAAAACCAAAACCTCTGGATCGTCCAGTTTTCT GATCCCACATTACCCTAGCATCTCTGGAAAAAAAATACATATGGGTAAGAAAGAAAATGCATAA TCTTGAACAACTGGTAAAATACCCTTCCGATAAAATGTCGCAGCTAGCAGAGTGAGAACTGGAA AAAAAAAATACACACAGATACGTGAAACACTTACGAGCAACTGGTAAATCCAGCGAAAAAAGCA AACAAAGCAGCATCTGTTACTTCCGGGCAAAGATCGCCAACAAAAATATTAAAATGGCCTGCAA GAATGAACAGACATCAGCAAAGCTCAATTTTAATAACTCAGATTCACATGTACACAGACAGTAC AGAACAATAATTGCAAAAGAACATTTAACAGTTTTTCAGTTCCCAACCTGATGTATCCTCTCTT TGAGTACTTGCATATGCCCAATTGACTTTTATTGGCTGGCCAAACCTGGTAATGTAGGATCATA AGAAAATGTTGGAAAATGTTAAGAGGAAAAGCAAAATATTAGAATTTATATATATTATAATACT ATAGTATTGAAATACTTACAATTGTCTACCGTTGAGTGATACAATTGCAATTGCAGCAGATCTA CGGTCATAATAGTCAACAAAACCAAAGGATGACTGCGAGATTTAATACAAAAAAGGAAATCATA TAAGCACATGTATATAAAAAGTGTACGGCTCAGCCAAACCTAAGAAGTTAATTACATTAAATCT GCTGAAAACATTTAGCCACTTAAACAAACTGATGCATCACATTGAAGCTTTCTCAAGAGAGATC AATACTGTAGTTAGTAACATAATAATTGAATGAATTTAGCTGTCTGGCCTATGTGAATAACATA GCAAACATTTTGAAACTTCCTTGTTCAGAATTACGGCATTTGTGCTAGCCTATCCTTACTATGA AATTCAACTGAATAAAATACTCCAAAATAGTCACTCCAGCATCATCACTATAGCTCTAGTGTTA ACCATTATGCTGAAAAATAAACTCTTGTATACATTTGAACTATGGTTCACTATAACAGATTTGC ATAAGTCATATCATGTACAAGTTGTTTGATGATATCGGTATATCACGCTTATGGTACTGGGCAG TGTCATACTGTCTTATAGTTATTATCAAGTTTTAAAAATACAGTATGCGAATGAAAAATGAAAT TCATTCAATGACAGATTTCAGTAACTATCAGTTTAGTTAATTAATTAAGGGATTAGGGGCGGGT ATGCATGTGCTTTTCTATGGAGATCGATAAAATACTCAGAACATCCCAAACGATAAAAATGCCT TCAACTAGCAACATTTACAAGGATACAAAAGGATCTAGCGAAAACAGTATAGATAATATTTTTT TTGTTAGGTTTGTCTCAAAGAGCAAAGATTCCACACCTTTTCCTTCCTGATGAGCTTGCATCCT TCTACTGGACCAATACTTTGGAAGACCTCATGTAGCAGTGAATCCGTCACTTGAAGATGGATAT TGCCAACATACCTATTCAGAACATCAATGGCAACCATAAGAAAGAATGAATGCAGAATATCTAG CCAACAATGCAATGCTGCAAATAACGAAGAGAGCTCGATCCAGATCAGTGGATCAAGGGCACTC TGCCCAAAGGCATAGCATTACCCAATCTAACTATTTCGTAATGTTGCGAAATAGAACCAAATCA GTGAAACAACAGTAACAAAGTTCCTTGGGCATAAACAGGGCAAAACAGGTGACAAATACTTACA CACTCCGGCATGTACTTGAATCAAATCCAGGAGGCAGGTTGCCACTAACAATGGGCTCTAT

			
						 Conservation Information
					
						Conserved circRNAs
						
							osi_circ_009179 						
					
						PMCS
						0.119962731

Conservation Information
Conserved circRNAs	osi_circ_009179
PMCS	0.119962731

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							24172557-24171652(-)
						
						Potential amino acid sequence
						
							MWDQKTGRSRGFGFVSFRNQQDAQNAINELNGKWLGNRQVRCNWATKGANAGEEKQNTDSKGMI
ELTNGSSEGGKDNANEDGPENNPQYTTVYVGNLPHDVNSNDVHRFFHSLGVGSIEEVRVTRDKG
FGFVRYSTHEEAALAIQTGNGQLIGGRQIKIEPIVSGNLPPGFDSSTCRSVYVGNIHLQVTDSL
LHEVFQSIGPVEGCKLIRKEKSSFGFVDYYDRRSAAIAIVSLNGRQLFGQPIKVNWAYASTQRE
DTSGHFNIFVGDLCPEVTDAALFAFFAGFTSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQNAI
NELNGKWLGNRQVRCNWATKGANAGEEKQNTDSKGMIELTNGSSEGGKDNANEDGPENNPQYTT
VYVGNLPHDVNSNDVHRFFHSLGVGSIEEVRVTRDKGFGFVRYSTHEEAALAIQTGNGQLIGGR
QIKIEPIVSGNLPPGFDSSTCRSVYVGNIHLQVTDSLLHEVFQSIGPVEGCKLIRKEKSSFGFV
DYYDRRSAAIAIVSLNGRQLFGQPIKVNWAYASTQREDTSGHFNIFVGDLCPEVTDAALFAFFA
GFTSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQNAINELNGKWLGNRQVRCNWATKGANAGEE
KQNTDSKGMIELTNGSSEGGKDNANEDGPENNPQYTTVYVGNLPHDVNSNDVHRFFHSLGVGSI
EEVRVTRDKGFGFVRYSTHEEAALAIQTGNGQLIGGRQIKIEPIVSGNLPPGFDSSTCRSVYVG
NIHLQVTDSLLHEVFQSIGPVEGCKLIRKEKSSFGFVDYYDRRSAAIAIVSLNGRQLFGQPIKV
NWAYASTQREDTSGHFNIFVGDLCPEVTDAALFAFFAGFTSCSDARVMWDQKTGRSRGFGFVSF
RNQQDAQNAINELNGKWLGNRQVRCNWATKGANAGEEKQNTDSKGMIELTNGSSEGGKDNANED
GPENNPQYTTVYVGNLPHDVNSNDVHRFFHSLGVGSIEEVRVTRDKGFGFVRYSTHEEAALAIQ
TGNGQLIGGRQIK(-)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	24172557-24171652(-)
Potential amino acid sequence	MWDQKTGRSRGFGFVSFRNQQDAQNAINELNGKWLGNRQVRCNWATKGANAGEEKQNTDSKGMI ELTNGSSEGGKDNANEDGPENNPQYTTVYVGNLPHDVNSNDVHRFFHSLGVGSIEEVRVTRDKG FGFVRYSTHEEAALAIQTGNGQLIGGRQIKIEPIVSGNLPPGFDSSTCRSVYVGNIHLQVTDSL LHEVFQSIGPVEGCKLIRKEKSSFGFVDYYDRRSAAIAIVSLNGRQLFGQPIKVNWAYASTQRE DTSGHFNIFVGDLCPEVTDAALFAFFAGFTSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQNAI NELNGKWLGNRQVRCNWATKGANAGEEKQNTDSKGMIELTNGSSEGGKDNANEDGPENNPQYTT VYVGNLPHDVNSNDVHRFFHSLGVGSIEEVRVTRDKGFGFVRYSTHEEAALAIQTGNGQLIGGR QIKIEPIVSGNLPPGFDSSTCRSVYVGNIHLQVTDSLLHEVFQSIGPVEGCKLIRKEKSSFGFV DYYDRRSAAIAIVSLNGRQLFGQPIKVNWAYASTQREDTSGHFNIFVGDLCPEVTDAALFAFFA GFTSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQNAINELNGKWLGNRQVRCNWATKGANAGEE KQNTDSKGMIELTNGSSEGGKDNANEDGPENNPQYTTVYVGNLPHDVNSNDVHRFFHSLGVGSI EEVRVTRDKGFGFVRYSTHEEAALAIQTGNGQLIGGRQIKIEPIVSGNLPPGFDSSTCRSVYVG NIHLQVTDSLLHEVFQSIGPVEGCKLIRKEKSSFGFVDYYDRRSAAIAIVSLNGRQLFGQPIKV NWAYASTQREDTSGHFNIFVGDLCPEVTDAALFAFFAGFTSCSDARVMWDQKTGRSRGFGFVSF RNQQDAQNAINELNGKWLGNRQVRCNWATKGANAGEEKQNTDSKGMIELTNGSSEGGKDNANED GPENNPQYTTVYVGNLPHDVNSNDVHRFFHSLGVGSIEEVRVTRDKGFGFVRYSTHEEAALAIQ TGNGQLIGGRQIK(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Chu et al., 2017

circRNA

Detail information of Os11g0620150_circ_g.3

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