Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Os11g0620150_circ_g.3 |
ID in PlantcircBase | osa_circ_009818 |
Alias | NA |
Organism | Oryza sativa |
Position | chr11: 24171650-24174334 JBrowse» |
Reference genome | IRGSP-1.0.38 |
Type | u-circRNA |
Identification method | CIRCexplorer, KNIFE, PcircRNA_finder |
Parent gene | Os11g0620150 |
Parent gene annotation |
Hypothetical gene. (Os11t0620150-01) |
Parent gene strand | + |
Alternative splicing | Os11g0620150_circ_g.1 Os11g0620150_circ_g.2 |
Support reads | 1 |
Tissues | root, seed |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Os11t0620100-01:10 Os11t0620100-03:7 Os11t0620150-01:10 Os11t0620100-01:10 Os11t0620100-03:7 |
Conservation Information | |
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Conserved circRNAs | osi_circ_009179 |
PMCS | 0.119962731 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
24172557-24171652(-) |
Potential amino acid sequence |
MWDQKTGRSRGFGFVSFRNQQDAQNAINELNGKWLGNRQVRCNWATKGANAGEEKQNTDSKGMI ELTNGSSEGGKDNANEDGPENNPQYTTVYVGNLPHDVNSNDVHRFFHSLGVGSIEEVRVTRDKG FGFVRYSTHEEAALAIQTGNGQLIGGRQIKIEPIVSGNLPPGFDSSTCRSVYVGNIHLQVTDSL LHEVFQSIGPVEGCKLIRKEKSSFGFVDYYDRRSAAIAIVSLNGRQLFGQPIKVNWAYASTQRE DTSGHFNIFVGDLCPEVTDAALFAFFAGFTSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQNAI NELNGKWLGNRQVRCNWATKGANAGEEKQNTDSKGMIELTNGSSEGGKDNANEDGPENNPQYTT VYVGNLPHDVNSNDVHRFFHSLGVGSIEEVRVTRDKGFGFVRYSTHEEAALAIQTGNGQLIGGR QIKIEPIVSGNLPPGFDSSTCRSVYVGNIHLQVTDSLLHEVFQSIGPVEGCKLIRKEKSSFGFV DYYDRRSAAIAIVSLNGRQLFGQPIKVNWAYASTQREDTSGHFNIFVGDLCPEVTDAALFAFFA GFTSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQNAINELNGKWLGNRQVRCNWATKGANAGEE KQNTDSKGMIELTNGSSEGGKDNANEDGPENNPQYTTVYVGNLPHDVNSNDVHRFFHSLGVGSI EEVRVTRDKGFGFVRYSTHEEAALAIQTGNGQLIGGRQIKIEPIVSGNLPPGFDSSTCRSVYVG NIHLQVTDSLLHEVFQSIGPVEGCKLIRKEKSSFGFVDYYDRRSAAIAIVSLNGRQLFGQPIKV NWAYASTQREDTSGHFNIFVGDLCPEVTDAALFAFFAGFTSCSDARVMWDQKTGRSRGFGFVSF RNQQDAQNAINELNGKWLGNRQVRCNWATKGANAGEEKQNTDSKGMIELTNGSSEGGKDNANED GPENNPQYTTVYVGNLPHDVNSNDVHRFFHSLGVGSIEEVRVTRDKGFGFVRYSTHEEAALAIQ TGNGQLIGGRQIK(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chu et al., 2017 |