Detail information of Os11g0620150_circ_g.3


General Information
CircRNA Name Os11g0620150_circ_g.3
ID in PlantcircBase osa_circ_009818
Alias NA
Organism Oryza sativa
Position chr11: 24171650-24174334  JBrowse»
Reference genome IRGSP-1.0.38
Type   u-circRNA
Identification method CIRCexplorer, KNIFE, PcircRNA_finder
Parent gene Os11g0620150
Parent gene annotation Hypothetical gene. (Os11t0620150-01)
Parent gene strand +
Alternative splicing Os11g0620150_circ_g.1 Os11g0620150_circ_g.2
Support reads 1
Tissues root, seed
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os11t0620100-01:10
Os11t0620100-03:7
Os11t0620150-01:10
Os11t0620100-01:10
Os11t0620100-03:7
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGGGCATAAACAGGGCAAAACAGGTGACAAATACTTACACACTCCGGCATGTACTTGAATCAAA
TCCAGGAGGCAGGTTGCCACTAACAATGGGCTCTATcttgatctgcctaccgccaataagttgt
ccattaccagtctgaattgctagagcagcttcttcatgggtgctgtaacgcacaaagccaaaac
ctttatca
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTGATCTGCCTACCGCCAATAAGTTGTCCATTACCAGTCTGAATTGCTAGAGCAGCTTCTTCA
TGGGTGCTGTAACGCACAAAGCCAAAACCTTTATCACGCGTTACACGCACCTCCTCAATTGAAC
CAACCCCAAGTGAATGGAAAAATCTGTGCACATCATTGCTGTTGACCTAGTAAATATAAGAGGC
AGAAACGTTACTGGTATGGAAAAACAACAAAATACAGCACAAAACAAAAAGAAATTTGTTTCAG
AAATGGGAGAGGTTACATCATGAGGAAGATTGCCAACATAAACAGTCGTGTACTGTGGGTTGTT
TTCAGGACCATCTTCATTTGCATTATCCTTTCCACCTTCTGCATAAAAAAGAACATGGAATACT
TTACAGTTCAGTACTTTCTAGCCATTTAACAGAGCTCTTGCTCAGTTGATTGTTACATTACATA
TTACAATCATGTATTGACTTAAACCAAAACAAGTGGGCCAGGACAAAAGGCATGTATATTCACC
TGATGAACCATTTGTCAACTCTATCATACCCTTGGAGTCTGTATTTTGTTTCTCTTCACCAGCA
TTAGCACCCTTTGTTGCCCAATTGCAACGAACTTGACGGTTGCCGAGCCACTTCCCTGAAGCAA
TGAAAAGTAAGCAGAAATGATCAGGTAGCTAGAACTAACCTAATGACTAGTGAGGCATGGCAAC
AAACATGGAAAAAGACTCACCATTCAGTTCATTTATGGCATTTTGTGCGTCCTGTCAATGAATA
ACAAAGATGATCAATCAGCACCGCACCAAAAAAAAGTACAAATAAATAAAAATTAAACTGTCAC
AATGACACTACCTGCTGATTTCTGAAAGAAACAAAACCAAAACCTCTGGATCGTCCAGTTTTCT
GATCCCACATTACCCTAGCATCTCTGGAAAAAAAATACATATGGGTAAGAAAGAAAATGCATAA
TCTTGAACAACTGGTAAAATACCCTTCCGATAAAATGTCGCAGCTAGCAGAGTGAGAACTGGAA
AAAAAAAATACACACAGATACGTGAAACACTTACGAGCAACTGGTAAATCCAGCGAAAAAAGCA
AACAAAGCAGCATCTGTTACTTCCGGGCAAAGATCGCCAACAAAAATATTAAAATGGCCTGCAA
GAATGAACAGACATCAGCAAAGCTCAATTTTAATAACTCAGATTCACATGTACACAGACAGTAC
AGAACAATAATTGCAAAAGAACATTTAACAGTTTTTCAGTTCCCAACCTGATGTATCCTCTCTT
TGAGTACTTGCATATGCCCAATTGACTTTTATTGGCTGGCCAAACCTGGTAATGTAGGATCATA
AGAAAATGTTGGAAAATGTTAAGAGGAAAAGCAAAATATTAGAATTTATATATATTATAATACT
ATAGTATTGAAATACTTACAATTGTCTACCGTTGAGTGATACAATTGCAATTGCAGCAGATCTA
CGGTCATAATAGTCAACAAAACCAAAGGATGACTGCGAGATTTAATACAAAAAAGGAAATCATA
TAAGCACATGTATATAAAAAGTGTACGGCTCAGCCAAACCTAAGAAGTTAATTACATTAAATCT
GCTGAAAACATTTAGCCACTTAAACAAACTGATGCATCACATTGAAGCTTTCTCAAGAGAGATC
AATACTGTAGTTAGTAACATAATAATTGAATGAATTTAGCTGTCTGGCCTATGTGAATAACATA
GCAAACATTTTGAAACTTCCTTGTTCAGAATTACGGCATTTGTGCTAGCCTATCCTTACTATGA
AATTCAACTGAATAAAATACTCCAAAATAGTCACTCCAGCATCATCACTATAGCTCTAGTGTTA
ACCATTATGCTGAAAAATAAACTCTTGTATACATTTGAACTATGGTTCACTATAACAGATTTGC
ATAAGTCATATCATGTACAAGTTGTTTGATGATATCGGTATATCACGCTTATGGTACTGGGCAG
TGTCATACTGTCTTATAGTTATTATCAAGTTTTAAAAATACAGTATGCGAATGAAAAATGAAAT
TCATTCAATGACAGATTTCAGTAACTATCAGTTTAGTTAATTAATTAAGGGATTAGGGGCGGGT
ATGCATGTGCTTTTCTATGGAGATCGATAAAATACTCAGAACATCCCAAACGATAAAAATGCCT
TCAACTAGCAACATTTACAAGGATACAAAAGGATCTAGCGAAAACAGTATAGATAATATTTTTT
TTGTTAGGTTTGTCTCAAAGAGCAAAGATTCCACACCTTTTCCTTCCTGATGAGCTTGCATCCT
TCTACTGGACCAATACTTTGGAAGACCTCATGTAGCAGTGAATCCGTCACTTGAAGATGGATAT
TGCCAACATACCTATTCAGAACATCAATGGCAACCATAAGAAAGAATGAATGCAGAATATCTAG
CCAACAATGCAATGCTGCAAATAACGAAGAGAGCTCGATCCAGATCAGTGGATCAAGGGCACTC
TGCCCAAAGGCATAGCATTACCCAATCTAACTATTTCGTAATGTTGCGAAATAGAACCAAATCA
GTGAAACAACAGTAACAAAGTTCCTTGGGCATAAACAGGGCAAAACAGGTGACAAATACTTACA
CACTCCGGCATGTACTTGAATCAAATCCAGGAGGCAGGTTGCCACTAACAATGGGCTCTAT
Conservation Information
Conserved circRNAs osi_circ_009179
PMCS 0.119962731
Functional Information
Coding potential Y
Potential coding position 24172557-24171652(-)
Potential amino acid sequence MWDQKTGRSRGFGFVSFRNQQDAQNAINELNGKWLGNRQVRCNWATKGANAGEEKQNTDSKGMI
ELTNGSSEGGKDNANEDGPENNPQYTTVYVGNLPHDVNSNDVHRFFHSLGVGSIEEVRVTRDKG
FGFVRYSTHEEAALAIQTGNGQLIGGRQIKIEPIVSGNLPPGFDSSTCRSVYVGNIHLQVTDSL
LHEVFQSIGPVEGCKLIRKEKSSFGFVDYYDRRSAAIAIVSLNGRQLFGQPIKVNWAYASTQRE
DTSGHFNIFVGDLCPEVTDAALFAFFAGFTSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQNAI
NELNGKWLGNRQVRCNWATKGANAGEEKQNTDSKGMIELTNGSSEGGKDNANEDGPENNPQYTT
VYVGNLPHDVNSNDVHRFFHSLGVGSIEEVRVTRDKGFGFVRYSTHEEAALAIQTGNGQLIGGR
QIKIEPIVSGNLPPGFDSSTCRSVYVGNIHLQVTDSLLHEVFQSIGPVEGCKLIRKEKSSFGFV
DYYDRRSAAIAIVSLNGRQLFGQPIKVNWAYASTQREDTSGHFNIFVGDLCPEVTDAALFAFFA
GFTSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQNAINELNGKWLGNRQVRCNWATKGANAGEE
KQNTDSKGMIELTNGSSEGGKDNANEDGPENNPQYTTVYVGNLPHDVNSNDVHRFFHSLGVGSI
EEVRVTRDKGFGFVRYSTHEEAALAIQTGNGQLIGGRQIKIEPIVSGNLPPGFDSSTCRSVYVG
NIHLQVTDSLLHEVFQSIGPVEGCKLIRKEKSSFGFVDYYDRRSAAIAIVSLNGRQLFGQPIKV
NWAYASTQREDTSGHFNIFVGDLCPEVTDAALFAFFAGFTSCSDARVMWDQKTGRSRGFGFVSF
RNQQDAQNAINELNGKWLGNRQVRCNWATKGANAGEEKQNTDSKGMIELTNGSSEGGKDNANED
GPENNPQYTTVYVGNLPHDVNSNDVHRFFHSLGVGSIEEVRVTRDKGFGFVRYSTHEEAALAIQ
TGNGQLIGGRQIK(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017