Detail information of Os11g0620150_circ_g.1


General Information
CircRNA Name Os11g0620150_circ_g.1
ID in PlantcircBase osa_circ_009816
Alias Os11circ08377
Organism Oryza sativa
Position chr11: 24171650-24172256  JBrowse»
Reference genome IRGSP-1.0.38
Type   u-circRNA
Identification method SMALT, Segemehl
Parent gene Os11g0620150
Parent gene annotation Hypothetical gene. (Os11t0620150-01)
Parent gene strand +
Alternative splicing Os11g0620150_circ_g.2 Os11g0620150_circ_g.3
Support reads 2
Tissues leaf and panicle
Exon boundary   Yes-No
Splicing signals   CT-AC
Number of exons covered Os11t0620100-03:3
Os11t0620100-01:3
Os11t0620100-03:3
Os11t0620150-01:3
Os11t0620100-01:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCACCTGATGAACCATTTGTCAACTCTATCATACCCTTGGAGTCTGTATTTTGTTTCTCTTCAC
CAGCATTAGCACCCTTTGTTGCCCAATTGCAACGAActtgatctgcctaccgccaataagttgt
ccattaccagtctgaattgctagagcagcttcttcatgggtgctgtaacgcacaaagccaaaac
ctttatca
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTGATCTGCCTACCGCCAATAAGTTGTCCATTACCAGTCTGAATTGCTAGAGCAGCTTCTTCA
TGGGTGCTGTAACGCACAAAGCCAAAACCTTTATCACGCGTTACACGCACCTCCTCAATTGAAC
CAACCCCAAGTGAATGGAAAAATCTGTGCACATCATTGCTGTTGACCTAGTAAATATAAGAGGC
AGAAACGTTACTGGTATGGAAAAACAACAAAATACAGCACAAAACAAAAAGAAATTTGTTTCAG
AAATGGGAGAGGTTACATCATGAGGAAGATTGCCAACATAAACAGTCGTGTACTGTGGGTTGTT
TTCAGGACCATCTTCATTTGCATTATCCTTTCCACCTTCTGCATAAAAAAGAACATGGAATACT
TTACAGTTCAGTACTTTCTAGCCATTTAACAGAGCTCTTGCTCAGTTGATTGTTACATTACATA
TTACAATCATGTATTGACTTAAACCAAAACAAGTGGGCCAGGACAAAAGGCATGTATATTCACC
TGATGAACCATTTGTCAACTCTATCATACCCTTGGAGTCTGTATTTTGTTTCTCTTCACCAGCA
TTAGCACCCTTTGTTGCCCAATTGCAACGAA
Conservation Information
Conserved circRNAs NA
PMCS 0.256836436
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Lu et al., 2015