Detail information of AT1G28420_circ_g.4


General Information
CircRNA Name AT1G28420_circ_g.4
ID in PlantcircBase ath_circ_004689
Alias NA
Organism Arabidpsis thaliana
Position chr1: 9981628-9981995  JBrowse»
Reference genome TAIR10.38
Type   ei-circRNA
Identification method PcircRNA_finder
Parent gene AT1G28420
Parent gene annotation Homeobox-DDT domain protein RLT1
Parent gene strand +
Alternative splicing AT1G28420_circ_g.1 AT1G28420_circ_g.2 AT1G28420_circ_g.3 AT1G28420_circ_g.5 AT1G28420_circ_g.6 AT1G28420_circ_g.7 AT1G28420_circ_g.8 AT1G28420_circ_g.9 AT1G28420_circ_g.10 AT1G28420_circ_g.11 AT1G28420_circ_g.12 AT1G28420_circ_g.13 AT1G28420_circ_g.14 AT1G28420_circ_g.15
Support reads 2
Tissues seed
Exon boundary   No-No
Splicing signals   AG-AC
Number of exons covered AT1G28420.1:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GAGGTTGATGCGTGAAAGAATAAAAGAAGAGGAAAGGTTACAGCGTGAGCAGCGTCGTGAAGTA
GAAAGAAGAGAAAAATTCTTACAGAGAGAAAATGAAagattaacgatggtagacttggaagagg
gagtgaaacccgagagaatcatggaccaaaagatcttgagaagctagaaattcagaggaaaaag
gtatttgc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence AGATTAACGATGGTAGACTTGGAAGAGGGAGTGAAACCCGAGAGAATCATGGACCAAAAGATCT
TGAGAAGCTAGAAATTCAGAGGAAAAAGGTATTTGCTCTACATTTATTATCCTCCTTACTGATT
ATTTGGAAAGGTGTCTTATTGTCTTTTGTTAGTATCACTGTAACAGATATATTGATGAGTTGAT
GCTTGTGTCCTCAGAATGAAGAACGCATGAGAAAAGAGATGGAAAGGAACGAGCGTGAGAGGCG
TAAGGAAGAAGAGAGGTTGATGCGTGAAAGAATAAAAGAAGAGGAAAGGTTACAGCGTGAGCAG
CGTCGTGAAGTAGAAAGAAGAGAAAAATTCTTACAGAGAGAAAATGAA
Conservation Information
Conserved circRNAs NA
PMCS 0.230271056
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017