Detail information of AT1G28420_circ_g.14


General Information
CircRNA Name AT1G28420_circ_g.14
ID in PlantcircBase ath_circ_004699
Alias Ath_circ_FC0540
Organism Arabidpsis thaliana
Position chr1: 9983817-9985373  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene AT1G28420
Parent gene annotation Homeobox-DDT domain protein RLT1
Parent gene strand +
Alternative splicing AT1G28420_circ_g.1 AT1G28420_circ_g.2 AT1G28420_circ_g.3 AT1G28420_circ_g.4 AT1G28420_circ_g.5 AT1G28420_circ_g.6 AT1G28420_circ_g.7 AT1G28420_circ_g.8 AT1G28420_circ_g.9 AT1G28420_circ_g.10 AT1G28420_circ_g.11 AT1G28420_circ_g.12 AT1G28420_circ_g.13 AT1G28420_circ_g.15
Support reads 1
Tissues root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered AT1G28420.1:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTGGCATTTTGCTGTATCAGTGTCTAAGAGTGATCCTTGTTCGAGGCTCTTATTTGTTGAGCTA
CATGATGGCAAGTGGCTCCTCATTGATTCAGAAGAGgctaaaggttgtgaagatgtcatttcta
ctatccgaaatggtacagcagctgaaagtgcttttgcatcgatgcgggagaaagggttgctcgc
tcctcgca
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GCTAAAGGTTGTGAAGATGTCATTTCTACTATCCGAAATGGTACAGCAGCTGAAAGTGCTTTTG
CATCGATGCGGGAGAAAGGGTTGCTCGCTCCTCGCAAGTCGAGGCACCGGTTGACACCTGGAAC
CGTCAAATTTGCAGCCTTTCATGTTCTATCTCTTGAAGGAAGCAAGGGACTGACAGTATTAGAA
CTTGCTGACAAGATTCAGGTAAATCTATAATCTATATTTGCTATGCTGTTTTCATCGTATTTGA
ATTTTTTTCATTTACATAGTCTTTATGTTTTCCATTGAAAGAAATCTGGACTTCGGGACTTGAC
CACAAGCAAGACACCAGAGGCTTCTATTTCTGTTGCATTGACAAGAGATGTGAAACTCTTTGAA
AGAATAGCTCCTTCGACTTATTGTGTACGAGCTCCTTATGTGAAGGATCCTAAGGATGGAGAGG
CAATACTCGCAGATGCCAGGAAGAAGATACGGGCTTTTGAAAATGGATTTACAGGTCCAGAAGA
TGTGAATGATCTTGAAAGGGATGAAGACTTCGAAATTGATATTGATGAGGATCCCGAGGTTGAT
GATTTAGCTACACTGGCAAGTGCATCAAAAAGTGCCGTTCTTGGAGAAGCGAATGTTTTGTCAG
GAAAGGGGGTAGATACAATGTTCTGTGATGTTAAAGCAGATGTAAAGAGTGAGCTTGAGAAGGA
GTTTTCATCTCCTCCTCCAAGCACTATGAAGAGCATTGTTCCACAACATAGTGAGCGGCATAAA
AATACAGTGGTTGGCGGCGTGGATGCCGTAATTGATGAAAGCAACCAGGGCCAATCATGGATTC
AAGGTCTTACGGAAGGGGATTACTGTCATCTAAGTGTTGAAGAGCGCCTTAATGCCCTTGTTGC
TTTAGTCGGCATTGCCAATGAAGGAAACTCCATCAGAACAGGTCTTGAGGTAAAGTCTGGGTTT
TCTTTTATCAGCTTTCCTGTTGAACAGAGTAGAAATTGACCTTTTGAGTCTATTATTTGTTATC
TGATTGAAATTTATTCACAGGATCGTATGGAAGCAGCAAATGCTCTTAAAAAGCAAATGTGGGC
TGAAGCACAGTTAGATAACAGCTGTATGAGAGATGTACTTAAGCTTGATCTTCAAAACTTAGCA
AGCAGCAAAACTGAATCAACGATAGGCCTACCAATCATTCAAAGCTCTACTCGTGAGAGGGATA
GTTTTGATAGAGACCCTTCTCAACTTCTAGATGAAACAAAGCCCCTGGAAGATCTTTCGAACGA
TCTTCATAAATCATCTGCTGAGAGAGCACTTATTAATCAGGATGCCAATATAAGTCAAGAAAAT
TATGCTTCAAAGAGATCACGCTCCCAATTAAAGTCATATATAGGCCACAAAGCAGAAGAGGTGT
ATCCATACCGATCTTTGCCGCTTGGACAAGATCGGCGCCACAATCGTTACTGGCATTTTGCTGT
ATCAGTGTCTAAGAGTGATCCTTGTTCGAGGCTCTTATTTGTTGAGCTACATGATGGCAAGTGG
CTCCTCATTGATTCAGAAGAG
Conservation Information
Conserved circRNAs NA
PMCS 0.178956263
Functional Information
Coding potential Y
Potential coding position 9983886-9985370(+)
Potential amino acid sequence MREKGLLAPRKSRHRLTPGTVKFAAFHVLSLEGSKGLTVLELADKIQKSGLRDLTTSKTPEASI
SVALTRDVKLFERIAPSTYCVRAPYVKDPKDGEAILADARKKIRAFENGFTGPEDVNDLERDED
FEIDIDEDPEVDDLATLASASKSAVLGEANVLSGKGVDTMFCDVKADVKSELEKEFSSPPPSTM
KSIVPQHSERHKNTVVGGVDAVIDESNQGQSWIQGLTEGDYCHLSVEERLNALVALVGIANEGN
SIRTGLEDRMEAANALKKQMWAEAQLDNSCMRDVLKLDLQNLASSKTESTIGLPIIQSSTRERD
SFDRDPSQLLDETKPLEDLSNDLHKSSAERALINQDANISQENYASKRSRSQLKSYIGHKAEEV
YPYRSLPLGQDRRHNRYWHFAVSVSKSDPCSRLLFVELHDGKWLLIDSEEAKGCEDVISTIRNG
TAAESAFASMREKGLLAPRKSRHRLTPGTVKFAAFHVLSLEGSKGLTVLELADKIQKSGLRDLT
TSKTPEASISVALTRDVKLFERIAPSTYCVRAPYVKDPKDGEAILADARKKIRAFENGFTGPED
VNDLERDEDFEIDIDEDPEVDDLATLASASKSAVLGEANVLSGKGVDTMFCDVKADVKSELEKE
FSSPPPSTMKSIVPQHSERHKNTVVGGVDAVIDESNQGQSWIQGLTEGDYCHLSVEERLNALVA
LVGIANEGNSIRTGLEDRMEAANALKKQMWAEAQLDNSCMRDVLKLDLQNLASSKTESTIGLPI
IQSSTRERDSFDRDPSQLLDETKPLEDLSNDLHKSSAERALINQDANISQENYASKRSRSQLKS
YIGHKAEEVYPYRSLPLGQDRRHNRYWHFAVSVSKSDPCSRLLFVELHDGKWLLIDSEEAKGCE
DVISTIRNGTAAESAFASMREKGLLAPRKSRHRLTPGTVKFAAFHVLSLEGSKGLTVLELADKI
QKSGLRDLTTSKTPEASISVALTRDVKLFERIAPSTYCVRAPYVKDPKDGEAILADARKKIRAF
ENGFTGPEDVNDLERDEDFEIDIDEDPEVDDLATLASASKSAVLGEANVLSGKGVDTMFCDVKA
DVKSELEKEFSSPPPSTMKSIVPQHSERHKNTVVGGVDAVIDESNQGQSWIQGLTEGDYCHLSV
EERLNALVALVGIANEGNSIRTGLEDRMEAANALKKQMWAEAQLDNSCMRDVLKLDLQNLASSK
TESTIGLPIIQSSTRERDSFDRDPSQLLDETKPLEDLSNDLHKSSAERALINQDANISQENYAS
KRSRSQLKSYIGHKAEEVYPYRSLPLGQDRRHNRYWHFAVSVSKSDPCSRLLFVELHDGKWLLI
DSEEAKGCEDVISTIRNGTAAESAFASMREKGLLAPRKSRHRLTPGTVKFAAFHVLSLEGSKGL
TVLELADKIQKSGLRDLTTSKTPEASISVALTRDVKLFERIAPSTYCVRAPYVKDPKDGEAILA
DARKKIRAFENGFTGPEDVNDLERDEDFEIDIDEDPEVDDLATLASASKSAVLGEANVLSGKGV
DTMFCDVKADVKSELEKEFSSPPPSTMKSIVPQHSERHKNTVVGGVDAVIDESNQGQSWIQGLT
EGDYCHLSVEERLNALVALVGIANEGNSIRTGLEDRMEAANALKKQMWAEAQLDNSCMRDVLKL
DLQNLASSKTESTIGLPIIQSSTRERDSFDRDPSQLLDETKPLEDLSNDLHKSSAERALINQDA
NISQENYASKRSRSQLKSYIGHKAEEVYPYRSLPLGQDRRHNRYWHFAVSVSKSDPCSRLLFVE
LHDGKWLLIDSEE(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017;Chen et al., 2017a