Detail information of Os01g0310800_circ_g.4


General Information
CircRNA Name Os01g0310800_circ_g.4
ID in PlantcircBase osa_circ_001508
Alias NA
Organism Oryza sativa
Position chr1: 11680828-11681518  JBrowse»
Reference genome IRGSP-1.0.38
Type   ue-circRNA
Identification method CIRCexplorer
Parent gene Os01g0310800
Parent gene annotation Similar to Pto kinase interactor 1. (Os01t0310800-01)
Parent gene strand +
Alternative splicing Os01g0310500_circ_g.1 Os01g0310500_circ_ag.1 EPlOSAG00000025527_circ_ig.1 Os01g0310800_circ_g.1 Os01g0310800_circ_g.2 Os01g0310800_circ_g.3
Support reads 1
Tissues shoot
Exon boundary   Yes-No
Splicing signals   GT-AG
Number of exons covered Os01t0310800-01:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TAATGAGATGCAGGCTACACCAAGGCTTAGTAAAGACAAGGTGAAACAATGCGTAGATCCAAAG
CTTGGACGAGCATTCCCACTCAAGGCTGTTGCCAGGgtagagaaggtgtcacaggagcccaagc
aagaccacctctatcatgggtgcagcgagtgaagattgctataactgctgcaaaagggcttgag
ttcctcca
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTAGAGAAGGTGTCACAGGAGCCCAAGCAAGACCACCTCTATCATGGGTGCAGCGAGTGAAGAT
TGCTATAACTGCTGCAAAAGGGCTTGAGTTCCTCCACGAGAAGGCCGTGCCTCCTGTCATCCAC
ACCAACATCAAGTCCAGCAACATACTTCTCTTTGGCAATGATGTTGCGAAAATAGGTGATCTCG
GTGTCTCGAAGCAGCTTCATGTTGAAGATTATGATTACAGTTATACACGAGTAGTTCCACAGAT
TTTTCGCTATGAAGCACCAGAGTATGCAACACAGTGTTTCCATGCTTTCAGATTGTTACACTAG
AGCCTTGGCTTGGAAATGGCATGCATTACCTCCTACTGATATGCTCTTTCCTTCGTTGGTTCTT
GCTAGGTGCAGGTTGAGAGGACAGTATAGTGTAAAGAGCGATGTCTACGCCTTTGGGGTTGTAT
TGTTGGAGCTTTTAACTGGTCGCAAAGTATTTGATCATACACTTCCGCGTGGCCAGATGAGCCT
TGTAAAATGGGTAAACATGCATGCTTGCATTCGCTGATCTAATTTCTTCATAGGATCAAGAAGC
TAATTAACCTGTTGATAATGAGATGCAGGCTACACCAAGGCTTAGTAAAGACAAGGTGAAACAA
TGCGTAGATCCAAAGCTTGGACGAGCATTCCCACTCAAGGCTGTTGCCAGG
Conservation Information
Conserved circRNAs NA
PMCS 0.25662582
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017