Detail information of Os01g0310500_circ_ag.1


General Information
CircRNA Name Os01g0310500_circ_ag.1
ID in PlantcircBase osa_circ_001503
Alias Os_ciR491
Organism Oryza sativa
Position chr1: 11663795-11681518  JBrowse»
Reference genome IRGSP-1.0.38
Type   ag-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing Os01g0310500_circ_g.1 EPlOSAG00000025527_circ_ig.1 Os01g0310800_circ_g.1 Os01g0310800_circ_g.2 Os01g0310800_circ_g.3 Os01g0310800_circ_g.4
Support reads 56
Tissues root
Exon boundary   Yes-No
Splicing signals   GT-AG
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TAATGAGATGCAGGCTACACCAAGGCTTAGTAAAGACAAGGTGAAACAATGCGTAGATCCAAAG
CTTGGACGAGCATTCCCACTCAAGGCTGTTGCCAGGgcttcctttgcccaccgtcaagctggtg
tcggagtccagcgtgttgaaggtagaggagaggtcggtggtggaacaaggggctgaaggccatt
tcggaggg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TOO LONG (>5KB) TO SHOW GENOMIC SEQUENCE OF THIS CIRCULAR RNA. PLEASE FIND THE CORRESPONDING GENOMIC SEQUENCE AT DOWNLOAD SECTION.
Conservation Information
Conserved circRNAs NA
PMCS 0.402305074
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs osa-miR166l-5p
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015