Detail information of Os01g0310500_circ_g.1


General Information
CircRNA Name Os01g0310500_circ_g.1
ID in PlantcircBase osa_circ_001502
Alias Os_ciR3494
Organism Oryza sativa
Position chr1: 11663795-11664583  JBrowse»
Reference genome IRGSP-1.0.38
Type   u-circRNA
Identification method find_circ
Parent gene Os01g0310500
Parent gene annotation Protein kinase, catalytic domain domain containing protein. (Os0
1t0310500-01);Conserved hypothetical protein. (Os01t0310500-02)
Parent gene strand +
Alternative splicing Os01g0310500_circ_ag.1 EPlOSAG00000025527_circ_ig.1 Os01g0310800_circ_g.1 Os01g0310800_circ_g.2 Os01g0310800_circ_g.3 Os01g0310800_circ_g.4
Support reads 2
Tissues root
Exon boundary   Yes-No
Splicing signals   GT-AG
Number of exons covered Os01t0310500-01:4
Os01t0310500-02:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGAAGGATATCTGGAATTGGCTGCAGAGACAATCATTTTTGTGGCAGTCATGCCCGGGTAGGGT
GTAGAGTACTGCATTACAGTGGATGTTGATCTACATgcttcctttgcccaccgtcaagctggtg
tcggagtccagcgtgttgaaggtagaggagaggtcggtggtggaacaaggggctgaaggccatt
tcggaggg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GCTTCCTTTGCCCACCGTCAAGCTGGTGTCGGAGTCCAGCGTGTTGAAGGTAGAGGAGAGGTCG
GTGGTGGAACAAGGGGCTGAAGGCCATTTCGGAGGGGAAGCTAGCCGTTATCCTTTTAGCCGGT
GGTGAGATGCTCTAATAGAAAGATTACCTGAATTTGCTATTTCTGTACTGTGTGCATTGGGAAG
CAGCCTCCTTATGGTTTGATTCCTCTTCATGTGTGTGCAGGAGACTTGGCCTGGCAGCTCTGAT
CCTAAAGGGTGTTTCGGTAGGTTGATTCCACTGCAATCTTATTAATAATTGACTTTATATGAAC
AAATGTATGGATATTTTTTCAGTTGAAAAAAGTGAGGTGCTCTGAATTGTTTTTGTTTTACACA
ATGTTTTTTTGGTTCAGAAACCCTTTCAATATTCTAATGTGATGAACAAGGTTATGTCCTTTGA
GCTCACTGAATCTGAAATTTTCACCTTTTATCTTATTTCACAGTTCAACATCTGGTGGGATAAT
CGATAGAGCTATATATGCAGAGGATAGGACATGGTGACTTTATGAAATTGGTAATTGCCATTTG
ATGTACTACAATAAAAAGTTACTTTAACTGGCGGAGTACAGTATTAACAATCTGCTTTTTAGTC
TGTAACAGTGAAATATCTTGGAATATATGTCGATTACTTAAGATCTTGTTGAAGGATATCTGGA
ATTGGCTGCAGAGACAATCATTTTTGTGGCAGTCATGCCCGGGTAGGGTGTAGAGTACTGCATT
ACAGTGGATGTTGATCTACAT
Conservation Information
Conserved circRNAs NA
PMCS 0.105196451
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015