Detail information of Os05g0402800_circ_ag.4


General Information
CircRNA Name Os05g0402800_circ_ag.4
ID in PlantcircBase osa_circ_027830
Alias Os_ciR9882
Organism Oryza sativa
Position chr5: 19616190-19621041  JBrowse»
Reference genome IRGSP-1.0.38
Type   ag-circRNA
Identification method CIRCexplorer, find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing Os05g0402800_circ_g.2 Os05g0402800_circ_ag.1 Os05g0402800_circ_g.2 Os05g0402800_circ_g.3 Os05g0402800_circ_ag.5 Os05g0402851_circ_g.1
Support reads 2/1
Tissues root/shoot, root
Exon boundary   Yes-No
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTGGAGTATGTTGCAATATCTTAGTGCCACCAAATAGGATATGATTCTTATCTCGCTTTACAGA
TAGTGTTTCCTCAGGACCACGACCAGCAACTGAGACaggcatatccggaagcaatttgtatgca
agggccaggactcgggacccctgtcgagtgtattttttgtatgtctccacatatccagcgggta
aatcaact
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence AGGCATATCCGGAAGCAATTTGTATGCAAGGGCCAGGACTCGGGACCCCTGTCGAGTGTATTTT
TTGTATGTCTCCACATATCCAGCGGGTAAATCAACTAACCTCTCCTGAATGGTCTCTGGTGCAC
CCTGAACCACAAAATAAGAGGATACTTCATTAAAGGTTTCTTGCAGAAGGCCTAGACAGAAACG
TTGAGCAAAAAATGTTTAAAATATCACAAGATCTAAAATAAAGAAAGTACAGAGTAATGCACCG
AGCTAGCTCCGAAATAACTAGTATCAAGATTTTTTTTCGCTAATAGATTTCCCTATTAAATGGT
CACTAATGCATCCAGAAGACTGTTGTTCAAGCAAACATATCTATTGCAGGGTGCTTGCCTGATA
CACAATATTTTTTATGAACTGTTAATTAGTTTAATGTGTATCATAGTTAGGCCTCCTTTGGAAC
ATGGGGATTTCTCCTGGTTCCTGAAGGAATTGAACGAATTCAAAGGAGACCTTATATATTTAAG
AGTAAAATATACGGCCGGTCCTTAAAGTTGAGCGCGGATATCACTTAGGTCCATGATCTTGTAA
ATTGCACATCTAGGTCCACCATCTTGTTTAAGTGACTCATTGAGGTCCAAACCTCGTTTGACCG
AAGCTGACCATCTACGTTGCATTCCACGTAGACAGCTAATTTGCAAATAGCCCCTTCGCGCTAC
AGTAGAGCCCTAGGCACAAAAAAAATCCCCAAATCCCTCGGCCACCTCCATCGTCACCTCGCCC
ACCGCCGCCGCAAGTCGTCCTCATCGCCAGCACCTTCGCCGGCCACGTCATACCGATGGCCGAG
CTGATGCGGCGCCTCGTCGCGCACCACGGCTGTGCCGCCTTGCTCATCACGTTCTCCGGCCTCG
CCTCGCCTCGCCAACATCAGCGTCCTCCGTCGACGTTGTCGTGGACCTCGACAAAGCGGCGCAT
GATTGCCAACGACGCAGTATTAGAGGGGATGAAGCAAGTGGCGGACGAGCTCGAAGATCAGGAC
GCCACGCCGTCGTGGACCTCAACGAAGCTGACGCGCCTCGCCATCGTTGTTGTTGCCGCCGCCA
TGGTGTCGACGTCGACGTGCTGCCCCAGGAAGAACTCGTGGTCGTTGAGGATGTCGAACGGCAC
CAACTCCAAGGACGGCACACCGCCCTGCCACAGCACGTCGGCCGTGGTGCCGGTGCTGGAGACG
AGCATCACCTTCTCGACGGCGGGCGTCGTGCCGCCCCACCGCGTCACCCTTAAATCCTTCTTGA
AGAACGAGCGACGGGCGAAACGGCGGTGGGCAAGCGCAGCGGTGGGCTGCGGGCGGAGCGGCGG
CGGGCGAATGCGGCAGCAGTTGGCGGGCGGCGGAGGGAGCCGGAGGAGAGCTTGCGGAGCGCCG
TCGCCATGACCATGGTGGGCGAGCTCGGAGCTCCGTCACCGTCTTCATAGCTAGCGCGCCGGTG
GCGCTCGCGCCTAACTGACAGCCAGATCCACCGGTCCCCTTCCCGCTGGTTGTTGGCGCCAGAG
GCGTCGGCGAGCTCGGCGCGCGGCGGGGGGAGGTGTCGCCGGCCGCTCCCGGGGGGAGGGGTCG
CCGACCGTGGCCGTGCGTGTGGGGGAGGCGTCGGCGAGCGGGGTGGGTGCGACCTCAACGGCGG
CAACGGCGGCAGGGCGAGCTCGACTTGAGCAACTGCCACAGCCGCTTGCCGCGCGCGCCAGCGG
CCAGCCAGAGCAGGGGCCTTTCCCTTCCACTCCTCCTTCTCCTTCCCGTCAACGACGGTGTGCG
GTTCCTCTGGGCGCTGTGCAACGCCGGTGAGCAGTTGCCGGAGGGGTACGAGGCGCGGCGTGGT
GGAGACGGGTGGGTGCCGCAGCTGCGCGTGCTGACACACGTCGCCGTCGGCGCGTTCCTGCGTG
CGCCACGCGAAGAAGGGATTGGATCGGACACGGGAAAGCAAAAGGGGGGGCAAAATGCAAATAT
GTTGCCACACTGGACCGCCACGTAAGCCAGTCAACCCGGTCAGAGATCCTTTGGACCTCAATGA
GTCACTTAAACAAGATGGTAGATCTAGATGTGCAATTTACAAGATTATGGACCTAAGTGGCACC
CGCGCTCAACTTTAAGAACCGGCCGTGTATTTTACTCTATATTTAATTTTGTTTGAATGAAGAT
AAGTTCTAACATGACAAATGGTAAATTATTCCTTTGCTGACTTCTAATTTTCTTATGATTTCAA
ACAAAGAGAAAAGAGCCAAGCCTCGAATAGGTCTCTTTGGATAGCCGCTCAAAATTTAGTGTAC
CCTAGTTAATATCCATCTAAAACATATGTAGGATAACAAGGTGAATTCTTCTCACTATTCATTT
GGTTCAAACCAATAATAAATATTCATAAACATGTAGAAATTCAAACCTTATGAAAATCACATTT
GTTTTGGTTGACTTAAAATATCTAAGAACAAGAAATCATGCCAAATGCATGGGCACACTGGGCC
AAAACCAAAAGAAATTGTTTCTGAACCATCCTAAGCAGCAATCTTACTAACAAAAGAAAAAAGT
GTAAAACATTTATGTAGTCTCTCGGAATTCCTACCTTTATGAAAGCATAATATTTCTCATGTAT
ACTGACAACAACAGACATTCTCTTCAAGTGTGAAGCAAAATGGTATCTGTGTACAATCTTTACA
GGTTGACCACCAGACCTGCAATGAAGATGACATCAAGTAAAATAAATAATAGAATATCTTTTTA
CTTTGGAATCAATAACTAATAACTGTACTGGTATTGACATTTCAGATATATTTGGATGTAATAC
ATGCAAGTCAATCAAACATCGAAATCCTGCTTTTGATAGAAAAAACATCTAGTCTATCATCTGT
GTACAGGACTTTCCAATGCTATAAACAGAGCCACAGTTGTGCATATAACAAACAGAAGAGAGAA
GAGAAATTGTCCAGAGAGAAGTAGTCCACTATAATCTTGGATATATGAATAAAGATAAAAAATT
ACTCCTAATACAACTAGCTTGACTTCAGAGAAGGGACAAAGTTGGCAGCATGCCACATAACTGA
CAAGGTGAAATAACACTAGTGTTAAAACCAATATGAAAGTTTATTTCGCTTGACTAGACACACA
GCTAATGTTCAGTTTTACAAATCTACTTGATAACACTTAATTAACTATGACATAGACATTATTG
TCTGATCAGGTTTAGGTCATCACATGAACAGTTCTACAATGAACACATATTTACATCTGTTATT
TCAGGCAACAACTTACTTTTTAGATATGGCCTTCTCATCAGATGTGTAGATCCAGTCTATGCCC
TTTATAGCAGCTTTTTCAAGGGGGTCACCAACCTTTGATAAGATGAAACATACCATCAACAAAA
GAAGGTATCTAAACTTCCGTTGGCTATGCTTCACATAGCTAGTTATTTCTGACATATAGTCCAT
TACATACCAGTTTGTTATCTACGAATACTAATGCATGGCAACTGGACAATACTTCTTGTGTGCG
GAGTGGCAATTTATTTGCATCTGTTATTAATTCTTCATCATCTTCCAAACTAACAACACCTTGG
AATTCCTGAAATGCATGTCACCTCGGTTGACAAAATTCCACTTGAATTGAAAATACAACACATG
GGTAAATCATTTACCATGTCATCCGATGTCAATGTCCCAGTTTTATCAAAACAGCATATGTCAA
CCTGATAAAAAAAATAAAGAGCTTTTAAAAGCTTTTGCAAGAAGGATTAAACATAAGCACAACA
AAGTTTTTTTTATTAACCTTCCCAGCAAATGGTATCCTGAATGGCTCTGTGCAGAAAATACCAC
GGCGGGCTAATGCAATTAAAGATGTATTGACTGCTATGGAGAGCTCCATTGGCAATTCAGGGGG
TATCACAGAAGTAAGAATCAATGAACAACTTAAGAAAAGCTTATATCTACTCCTTGTTGGGTCC
TCCAGTCCCTACATACGGACAGACCAAAGTTCAAATAATATTGAAGTGTGCTATATAGCATACA
ATTAAACATATGGATTTTCTTGATAATTCCATCTGGCATTACCTTGACAAGCACATAACCGGAT
GCAATTACTGCGAAGAATAGCAAAAATAGGATAAACAGGCCACTCTCCTTGCTGTTTGCAGTAA
CCTGTTATATTGTTAGAATCAGAGTGTTATGTTTGCACATCTTAACAGCATTATTAACTCTAAT
GCATGAAAAAGTTACCCTCTCAGTTGAAAATAAGATAGTTCTCATCAACTTTCCCTGGCTAGTC
TCAAATCCAGTCCTCAATACAAAAGCTATGCAACCACCATCAGGTGCTCGGAGATTTATAGACT
GCACAGAAGTAAGACATGTCAGCAAGATTCCCAGTACATCTCCTCCCTCCAATCAGCAAAACTT
GACATTCTAACATACTCCACAGAACGATGCACCTCTTTAATGCTAGATAGCCAGTTTAACCTTC
ATTAGTTTAATATCGTTCATTAGTTCCAAGCCCATCTACCCATTAGGCAAAGCATAGTGGCATC
AGTTGATACAACCAGCAGCACTGCCACATGGAGCTGTGACATAGCCGAAGTTATCTCAACCAGA
AAACCTTTGAGATTCCTAAGCTTTGATAGGGGTTATAAGGGAAAACTTTACGTAGAAAATCTAA
AATGACTAAATCAACATGCCAAAACACTACCTAAAAGTGAACAGAGGGAGCAGTAGGTATAATA
GATGTGTATACCTTATCTGGAGTATGTTGCAATATCTTAGTGCCACCAAATAGGATATGATTCT
TATCTCGCTTTACAGATAGTGTTTCCTCAGGACCACGACCAGCAACTGAGAC
Conservation Information
Conserved circRNAs osi_circ_015450
PMCS 0.30862168
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs osa-miR2919
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015;Chu et al., 2017