Detail information of BGIOSGA018086_circ_g.3


General Information
CircRNA Name BGIOSGA018086_circ_g.3
ID in PlantcircBase osi_circ_015450
Alias Chr05:20494839_20499682(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr5: 20845575-20850409  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRI2, CIRCexplorer2
Parent gene BGIOSGA018086
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA018086_circ_g.4 BGIOSGA018086_circ_g.5
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   CT-TA
Number of exons covered BGIOSGA018086-TA:10
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTGGAGTATGTTGCAATATCTTAGTGCCACCAAATAGGATATGATTCTTATCTCGCTTTACAGA
TAGTGTTTCCTCAGGACCACGACCAGCAACTGAGACcaggcatatccggaagcaatttgtatgc
aagggccaggactcgggacccctgtcgagtgtattttttgtatgtctccacatatccagcgggt
aaatcaac
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CAGGCATATCCGGAAGCAATTTGTATGCAAGGGCCAGGACTCGGGACCCCTGTCGAGTGTATTT
TTTGTATGTCTCCACATATCCAGCGGGTAAATCAACTAACCTCTCCTGAATGGTCTCTGGTGCA
CCCTGAACCACAAAATAAGAGGATACTTCATTAAAGGTTTCTTGCAGAAGGCCTAGACAGAAAC
GTTGAGCAAAAAATGTTTAAAATATCACAAGATCTAAAATAAAGAAAGTACAGAGTAATGCACC
GAGCTAGCTCCGAAATAACTAGTATCAAGATTTTTTTTCGCTAATAGATTTCCCTATTAAATGG
TCACTAATGCATCCAGAAGACTGTTGTTCAAGCAAACATATCTATTGCAGGGTGCTTGCCTGAT
ACACAATATTTTTTATGAACTGTTAATTAGTTTAATGTGTATCATAGTTAGGCCTCCTTTGGAA
CATGGGGATTTCTCCTGGTTCCTGAAGGAATTGAACGAATTCAAAGGAGACCTTATATATTTAA
GAGTAAAATATACGGCCAGTCCTTAAAGTTGAGCGCGGATATCACTTAGGTCCATGATCTTGTA
AATTGCACATCTAGGTCCACCATCTTGTTTAAGTGACTCATTGAGGTCCAAACCTCGTTTGACC
GAAGCTGACCGTCTACGTTGCATTCCACGTAGACAGCTAATTTGCAAATAGCCCCTTCGCGCTA
CAGTAGAGCCCTAGGCACAAAAAAAATCCCCAAATCCCTCGGCCGCCTCCATCGTCACCTCGCC
CACCGCCGCCGCAAGTCGTCCTCATCGGCAGCACCTTCGCCGGCCACGTCATACCGATGGCCGA
GCTGATGCGGCGCCTCGTCGCGCACCACGGCTATGCCGCCTTGCTCGTCACGTTCTCCGGCCTC
GCCTCGCCTCGCCAACATCAGCGTCCTCCGTCGACGTTGTCGTGGACCTCGACAAAGCGGCGCA
TGATTGCCAACGACGCAGTATTAGAGGGGATGAAGCGAGTGGCGGACGAGCTCGAAGATCAGGA
CGCCGCGCCGTCGTGGACCTCAACGAAGCTGACGCGCCTCGCCGTCGTTGTTGTTGCCGCCGCC
ATGGTGTCGACGTCGACGTGCTGCCCTAGGAAGAACTCGTGGTCGTTGAGGATGTCGAACGGCA
CCAACTCCAAGGACGGCACACCGCCCTGCCACAGCACGTCGGCCGTGGTGCCGGTGCTGGAGAC
GAGCATCACCTTCTCGACGGCGGGCGCCGTGCCGCCCCACTGCGTCACCCTTAAATCCTTCTTG
AAGAACGAGCGACGGGCGAAACGGCGGTGGGCAAGCGCAGCGGTGGGCTGCGGGCGGAGCGGCG
GCGGGAGAATGCGGCAGCAGTTGGCGAGCGGCGGAGGAAGCCGGAGGAGAGCTTGCGGAGCGCC
GTCGCCATGACCATGGTGGGCGAGCTCGGAGCTCCGTCACCGTCTTCATAGCTAGCGCGCCGGT
GGCGCTCGCGCCTAACTGACAGCCAGATCCACCGGTCCCCTTCCCGCTGGTTGTTGGCGCCAGA
GGCGTCGGCGAGCTCGGCGCGCGGTGGGGGCGAGGTGTCGCCGCCCGCTCCCGGGGGGAGGGGT
CGCCGACCGTGGCCGTGCGTGTGGGGGAGGCGTCGGCGAGCGGGGTAGGTGCGAGCTCAACGGC
GGCAGGGCAAGCTCGACTTGAGCAACTGCCACAGCCGCTTGCCGCGCGCGCCAACGGCCAGCCA
GAGTGGGGGCCTTTCCCTTCCACTCCTCCTTCCCGTCAACGACGGTGTGTGGTTCCTCTAGGCG
CTGCGCAACGCCGGTGAGCAGTTGGCGGAGGGGTACAAGGCGCGGCGTGGTGGAGACAGGTGGG
TGCCGCAGCTGCGCGTGCTGACACACGTCGCCGTCGGCACGTTCCTGCGTGCGCCACGCGAAGA
AGGGATTGGATCGGACACGGGAAAGCAAAAGGGGGGCAAAATGCAAATATGTTGCCACACTGGA
CCGCCACGTAAGCCACTCAACCCGGTCAGAGATCCTCTGGACCTCAATGAGTCACTTAAACAAG
ATGGTAGATCTAGATGTGCAATTTACAAGATTATGGACCTAAGTGACACCCGCGCTCAACTTTA
AGGACCGGCCGTGTATTTTACTCTATATTTAATTTTGTTTGAATGAAGATAAGTTCTAACATGA
CAAATGGTAAATTATTCCTTTGCTGACTTCTAATTTTCTTATGATTTCAAACAAAGAGAAAAGA
GCCAAGCCTCGAATAGGTCTCTTTGGATAGCCGCTCAAAATTTAGTGTACCCTAGTTAATATCC
ATCTAAAACATATGTAGGATAACAAGGTGAATTCTTCTCACTATTCATTTGGTTCAAACCAATA
ATAAATATTCATAAACATGTAGAAATTCAAACCTTATGAAAATCACATTTGTTTTGGTTGACTT
AAAATATCTAAGAACAAGAAATCATGCCAAATGCATGGGCACACTGGGCCAAAACCAAAAGAAA
TTGTTTCTGAACCATCCTAAGCAGCAATCTTACTAACAAAAGAAAAAAGTGTAAAACATTTATG
TAGTCTCTCGGAATTCCTACCTTTATGAAAGCATAATATTTCTCATGTATACTGACAACAACAG
ACATTCTCTTCAAGTGTGAAGCAAAATGGTATCTGTGTACAATCTTTACAGGTTGACCACCAGA
CCTGCAATGAAGATGACATCAAGTAAAATAAATAATAGAATATCTTTTTACTTTGGAATCAATA
ACTAATAACTGTACTGGTATTGACATTTCAGATATATTTGGATGTAATACATGCAAGTCAATCA
AACATCGAAATCCTGCTTTTGATAGAAAAAACATCTAGTCTATCATCTGTGTACAGGACTTTCC
AATGCTATAAACAGAGCCACAGTTGTGCATATAACAAACAGAAGAGAGAAGAGAAATTGTCCAG
AGAGAAGTAGTCCACAATCTTGGATATATGAATAAAGATAAAAAATTACTCCTAATACAACTAG
CTTGACTTCAGAGAAGGGACAAAGTTGGCAGCATGCCACATAACTGACAAGGTGAAATAACACT
AGTGTTAAAACCAATATGAAAGTTTATTTCGCTTGACTAGACACACAGCTAATGTTCAGTTTTA
CAAATCTACTTGATAACACTTAATTAACTATGACATAGACATTATTGTCTGATCAGGTTTAGGT
CATCACATGAACAGTTCTACAATGAACACATATTTACATCTGTTATTTCAGGCAACAACTTACT
TTTTAGATATGGCCTTCTCATCAGATGTGTAGATCCAGTCTATGCCCTTTATAGCAGCTTTTTC
AAGGGGGTCACCAACCTTTGATAAGATGAAACATACCATCAACAAAAGAAGGTATCTAAACTTC
CGTTGGCTATGCTTCACATAGCTAGTTATTTCTGACATATAGTCCATTACATACCAGTTTGTTA
TCTACGAATACTAATGCATGGCAACTGGACAATACTTCTTGTGTGCGGAGTGGCAATTTATTTG
CATCTGTTATTAATTCTTCATCATCTTCCAAACTAACAACACCTTGGAATTCCTGAAATGCATG
TCACCTCGGTTGACAAAATTCCACTTGAATTGAAAATACAACACATGGGTAAATCATTTACCAT
GTCATCCGATGTCAATGTCCCAGTTTTATCAAAACAGCATATGTCAACCTGATAAAAAAAATAA
AGAGCTTTTAAAAGCTTTTGCAAGAAGGATTAAACATAAGCACAACAAAGTTTTTTTTATTAAC
CTTCCCAGCAAATGGTATCCTGAATGGCTCTGTGCAGAAAATACCACGGCGGGCTAATGCAATT
AAAGATGTATTGACTGCTATGGAGAGCTCCATTGGCAATTCAGGGGGTATCACAGAAGTAAGAA
TCAATGAACAACTTAAGAAAAGCTTATATCTACTCCTTGTTGGGTCCTCCAGTCCCTACATACG
GACAGACCAAAGTTCAAATAATATTGAAGTGTGCTATATAGCATACAATTAAACATATGGATTT
TCTTGATAATTCCATCTGGCATTACCTTGACAAGCACATAACCGGATGCAATTACTGCGAAGAA
TAGCAAAAATAGGATAAACAGGCCACTCTCCTTGCTGTTTGCAGTAACCTGTTATATTGTTAGA
ATCAGAGTGTTATGTTTGCACATCTTAACAGCATTATTAACTCTAATGCATGAAAAAGTTACCC
TCTCAGTTGAAAATAAGATAGTTCTCATCAACTTTCCCTGGCTAGTCTCAAATCCAGTCCTCAA
TACAAAAGCTATGCAACCACCATCAGGTGCTCGGAGATTTATAGACTGCACAGAAGTAAGACAT
GTCAGCAAGATTCCCAGTACATCTCCTCCCTCCAATCAGCAAAACTTGACATTCTAACATACTC
CACAGAACGATGCACCTCTTTAATGCTAGATAGCCAGTTTAACCTTCATTAGTTTAATATCGTT
CATTAGTTCCAAGCCCATCTACCCATTAGGCAAAGCATAGTGGCATCAGTTGATACAACCAGCA
GCACTGCCACATGGAGCTGTGACATAGCCGAAGTTATCTCAACCAGAAAACCTTTGAGATTCCT
AAGCTTTGATAGGGGTTATAAGGGAAAACTTTACGTAGAAAATCTAAAATGACTAAATCAACAT
GCCAAAACACTACCTAAAAGTGAACAGAGGGAGCAGTAGGTATAATAGATGTGTGTACCTTATC
TGGAGTATGTTGCAATATCTTAGTGCCACCAAATAGGATATGATTCTTATCTCGCTTTACAGAT
AGTGTTTCCTCAGGACCACGACCAGCAACTGAGAC
Conservation Information
Conserved circRNAs osa_circ_027830
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs osa-miR2919
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021