Detail information of Os03g0784400_circ_g.1


General Information
CircRNA Name Os03g0784400_circ_g.1
ID in PlantcircBase osa_circ_022133
Alias Os_ciR8894
Organism Oryza sativa
Position chr3: 32555160-32556354  JBrowse»
Reference genome IRGSP-1.0.38
Type   ue-circRNA
Identification method CIRCexplorer, find_circ
Parent gene Os03g0784400
Parent gene annotation Protein of unknown function DUF1692 domain containing protein. (
Os03t0784400-01);Similar to predicted protein. (Os03t0784400-02)
Parent gene strand +
Alternative splicing Os03g0784400_circ_g.2 Os03g0784400_circ_g.3 Os03g0784400_circ_g.4 Os03g0784400_circ_g.5 Os03g0784400_circ_g.6 Os03g0784400_circ_g.7
Support reads 2/2
Tissues root/root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os03t0784400-01:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTTGACCTTTTTCCCCTGGCTCTTTTGTTTAGTCTTGAGTGTGGATGCAATTGACATGTCTGGC
AAGCATGAAGTGGACTTGCATACAAATATTTGGAAGctgaaaaatggggaggataccgtctctg
aaaaatttcaatgccttcccccatgcggaagaccacttactaaagaagacttactctggtgcta
tcggtatg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTGAAAAATGGGGAGGATACCGTCTCTGAAAAATTTCAATGCCTTCCCCCATGCGGAAGACCAC
TTACTAAAGAAGACTTACTCTGGTGCTATCGGTATGGGAGATCCTATTTCTTCATGATTTTGTC
CTGTGGGTACTGATGTTTCATTTGGAGATGTTTGGTTGATTTGTGCAACTATGGATATGTTTGC
AGTCACGATTTTCGGACTAATTATAATGGTTACGTTATTTGCGCACGAGCTCAAATTTTATCTT
ACCACCTATACTGTTCATCAGGTATGGTTGGTTGTTTCCTTTTCTTCTATGTCTAGCATGTGCA
ACTTTACTGTAATTTTGCATATAAGTTGGTTATTTTGCCACTCAATAACAGCTTTTAATGATAT
TTCATTAGTAATGGGAATATGTATGTAGGTGATAGCTATCCTGTTTTGGTCTATTTAACAAAAT
TGACCAGAGAATCTGTATGATGACAGAAGGGTATCTTGGAGAACTTAACCATGATTTTCATTGA
ATTACATTATTCTAATTGTTTTAAATATCTACTGATTGCTATTTGGATATGATGATTTTTCATT
CCTTGCTTCGGTCCTTACCAATGCCAATTTCATGGGCCTCTCATATACTCCCTCCATCCACAAA
AGTTAGACATATTTCACATTTGAGTTTTTCCAAGTAAGTTGTTCCTATTTGTAGTCTTTATATG
CATTCAAGACTTGAATCAAGAGATAAATTAAATGTTTGATTAGAACCCAAAGAGTCATTTAAAT
ACTCATTGGTTGCATGCTTGCATTTACTCCTTGATTTTGTAACATCTAAGATGATTTAATTTCT
CCTTGGTCTTAGTGACAAAAGTAATAGGTATAACTTTTGTGGATGGAGGGAGTATCTTACTAAG
AAATCATGACATGAGCCATCACTATCTAATTGATGCTGTCTGCAGATGTCTGTAGATCTGAAAC
GAGGAGAAACTCTGCCAATTCATATAAATATGTCATTTCCCTCTCTACCATGTGAAGGTCAGTT
ATTGATTAAATGCATCCTTATCAGTTCGATATGAGGTTTCTTTTCAACGTTGGTTTGCAAGGAG
ATTATGGTTTGACCTTTTTCCCCTGGCTCTTTTGTTTAGTCTTGAGTGTGGATGCAATTGACAT
GTCTGGCAAGCATGAAGTGGACTTGCATACAAATATTTGGAAG
Conservation Information
Conserved circRNAs osi_circ_013722
PMCS 0.14500636
Functional Information
Coding potential Y
Potential coding position 32555168-32556171(+)
32555213-32555416(-)
Potential amino acid sequence MGRIPSLKNFNAFPHAEDHLLKKTYSGAIVTIFGLIIMVTLFAHELKFYLTTYTVHQMSVDLKR
GETLPIHINMSFPSLPCEVLSVDAIDMSGKHEVDLHTNIWKLKNGEDTVSEKFQCLPPCGRPLT
KEDLLWCYRHDFRTNYNGYVICARAQILSYHLYCSSDVCRSETRRNSANSYKYVISLSTM*(+)
MGEGIEIFQRRYPPHFSASKYLYASPLHACQTCQLHPHSRLHMVEREMTYLYELAEFLLVSDLQ
TSDEQYRW*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015;Chu et al., 2017