Detail information of Os03g0784400_circ_g.4


General Information
CircRNA Name Os03g0784400_circ_g.4
ID in PlantcircBase osa_circ_022136
Alias NA
Organism Oryza sativa
Position chr3: 32556719-32558951  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene Os03g0784400
Parent gene annotation Protein of unknown function DUF1692 domain containing protein. (
Os03t0784400-01);Similar to predicted protein. (Os03t0784400-02)
Parent gene strand +
Alternative splicing Os03g0784400_circ_g.1 Os03g0784400_circ_g.2 Os03g0784400_circ_g.3 Os03g0784400_circ_g.5 Os03g0784400_circ_g.6 Os03g0784400_circ_g.7
Support reads 1
Tissues root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os03t0784400-01:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCTATCCTTTGGTCCAAAATATCCTGGAATTCATAATCCACTGGATGAGACTACAAGGATACTC
CATGATACAAGTGGGACCTTCAAATACTATATCAAGcttcgcttggataagtatggccatatca
ttggtacggagtatttaaatgatctagttgagaaggagcatgggactcacaatcatggtatact
ctgctgct
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTCGCTTGGATAAGTATGGCCATATCATTGGTACGGAGTATTTAAATGATCTAGTTGAGAAGG
AGCATGGGACTCACAATCATGGTATACTCTGCTGCTTCCATAAAGATAAAACTAATGTACACTG
AACTGCCATATGAATTATTGTTGTTTCAGTCCCTAGTGTGTACATTGTTTCCTTCTTTTGCTCA
CTGTAAATTGCAGCTCGCTAGTAATAGTTGTTTGCAGTTATAATTGTGGTCCAATTATCCAAAC
AATACTTTAAGTAATATATTAAGGACACAGATCTAGGGAAACCCTTGAGACAACAAATTAACTA
AATCTATTGACAATATGTTATAGTCAGAATGTCCCATTTGATGCGCCAACATGCTTTATACTGA
TTTAGTTAAAATGTCTGATGTGATGGAGAAATATGCTTTATTTAGAATGTTCCATTAAGTACGT
AGCCTGGAATGGGTTCAAGCATGGAAACAGTGTTTCTTAGTAATATAATGTTTGCCTTTCTTAG
TATATAAGTTCAAGCAAAAAAGAAAATTGATTGCAACAATGTGCTATCGAGCTTGCTTTGGTAC
TTTCTGGAAAGATGTACCAGCCACCCAAAAAAAATGGTTCCAATAATTAGCTATTTAGCTTGCT
GTCATGGTCAAACATTGTCTTTGCTGAAAAATTATCATTGGAAAGAATTAATTCTCGTTTCGAG
TAACATATGGATTGTCATTTGGGAAGGTGGGAGGAGGGATGGTGATGTAGAACTTACCATCACT
GTCATTAACTCGAATACTTTTAGTAGAGATAAAAAACAATCAAATCTAGTTATTTTATTGGGAT
TATCTACTTAAGTAAAAAAAAACCCTACCTTATCGCTTCTTAATGTGAAACTTTCCCCTTGAAA
ACACAGTTTAGTTGACAATCTCTTGGCGCTTATTTTTCTATACATAATAAGCTAGTGGTTTAAC
AGATCATGACCATGAGCATGAAGATGAACAAAAGAAGCAAGAGCACACCTTTAATGAAGATGCA
GAAAAAATGGTTAAGAGTGTGAAACAAGCAATGGAAAATGGTGAAGGGTGCCGAGTAAGATATT
TCTCTACCAGTATCCTTTAATTTATGGAATGGTATTATTAAGGCTATTATCATCAGGCATACCA
TGTACTTGTTAAAACATTTTGCTTTCAATTTTCACAGGTTTATGGTGTTCTAGATGTGCAGAGG
GTTGCTGGTAACTTCCATATCTCGGTTCATGGTTTGAACATTTTTGTTGCTGAGAAGGTTATTC
ATCTAAAACTGCATATTTTTTTTACTTCTGTGCTTCCATCTGTATGCTTTTTGCTGTGAAATAT
GTTAATTTCTTTTTGTATGAAGTTGCCAGGATTATTGTATAAGCTTCTAGGTTTTCAGTTTATG
ACAGATCATGTTCACAAGGGTTTAAAATTATTCAACTAAAAATCCCTTCAGAAACTATTGAAAC
CAGCCAGCTCCTACTTCCTGGTAATGCCATATTGGACAAGTGCTTTGTGCATCTTGTACAAGAC
TTCCTAAAACTGTCCACAATTAGGATAATGTTTTAATGGTAAACAGATGCTAGTGATTACGAGA
GAAGGAAAATAACACAACCTAATGATAATAATAATAATAAGTTAGCCAGTAAACAACTCAATAC
TCACCAGTTTGGTGCACACCAGATCAAGCTGGGATTGGAACAAAAAAAAGGACGTGGGAAGTAT
CTTCTTTTGGCCATCACATTATATAATTGTCAGCTTATATGAACCACAATATTTTCTTTACATT
GGATGTGCTTATGTCTCTTCGATTTTTATGAAAAATATGCATTAAAAAGCAACCACCTAGGTAG
CTAGGCGGTGCACTACTGCCTAAGGCGCCTAATTGATTTATTATGCCGCATAGGTGGCTTGCTA
GCCCCGTCTTATGGTGTACTACACTCTGGTATGCCGCCTAACTAGCACATAAAGGCCTCAGTGA
TTTCAACCTCTTTTTGTGCTACCTATAAATAAGTGTTTTATGCTTTTATTTGTATTGTTATTAC
TCTCTATGTAAATTTTCATTTTCATCTGTTGTATGTAGATTTTTGATGGGTCAAGCCATGTGAA
CGTCAGTCATATCATCCATGATCTATCCTTTGGTCCAAAATATCCTGGAATTCATAATCCACTG
GATGAGACTACAAGGATACTCCATGATACAAGTGGGACCTTCAAATACTATATCAAG
Conservation Information
Conserved circRNAs NA
PMCS 0.116293126
Functional Information
Coding potential Y
Potential coding position 32557750-32558948(+)
32558849-32556761(+)
32556744-32558855(-)
Potential amino acid sequence MVKSVKQAMENGEGCRVYGVLDVQRVAGNFHISVHGLNIFVAEKIFDGSSHVNVSHIIHDLSFG
PKYPGIHNPLDETTRILHDTSGTFKYYIKLRLDKYGHIIGTEYLNDLVEKEHGTHNHDHDHEHE
DEQKKQEHTFNEDAEKMVKSVKQAMENGEGCRVYGVLDVQRVAGNFHISVHGLNIFVAEKIFDG
SSHVNVSHIIHDLSFGPKYPGIHNPLDETTRILHDTSGTFKYYIKLRLDKYGHIIGTEYLNDLV
EKEHGTHNHDHDHEHEDEQKKQEHTFNEDAEKMVKSVKQAMENGEGCRVYGVLDVQRVAGNFHI
SVHGLNIFVAEKIFDGSSHVNVSHIIHDLSFGPKYPGIHNPLDETTRILHDTSGTFKYYIKLRL
DKYGHIIGTEYLNDLVEKEHGTHNHDHDHEHEDEQKKQEHTFNEDAEKMVKSVKQAMENGEGCR
VYGVLDVQRVAGNFHISVHGLNIFVAEKIFDGSSHVNVSHIIHDLSFGPKYPGIHNPLDETTRI
LHDTSGTFKYYIK(+)
MIYPLVQNILEFIIHWMRLQGYSMIQVGPSNTISSFAWISMAISLVRSI*(+)
MAILIQAKLDIVFEGPTCIMEYPCSLIQWIMNSRIFWTKG*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017