Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Os03g0784400_circ_g.4 |
ID in PlantcircBase | osa_circ_022136 |
Alias | NA |
Organism | Oryza sativa |
Position | chr3: 32556719-32558951 JBrowse» |
Reference genome | IRGSP-1.0.38 |
Type | e-circRNA |
Identification method | CIRCexplorer |
Parent gene | Os03g0784400 |
Parent gene annotation |
Protein of unknown function DUF1692 domain containing protein. ( Os03t0784400-01);Similar to predicted protein. (Os03t0784400-02) |
Parent gene strand | + |
Alternative splicing | Os03g0784400_circ_g.1 Os03g0784400_circ_g.2 Os03g0784400_circ_g.3 Os03g0784400_circ_g.5 Os03g0784400_circ_g.6 Os03g0784400_circ_g.7 |
Support reads | 1 |
Tissues | root |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Os03t0784400-01:4 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.116293126 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
32557750-32558948(+) 32558849-32556761(+) 32556744-32558855(-) |
Potential amino acid sequence |
MVKSVKQAMENGEGCRVYGVLDVQRVAGNFHISVHGLNIFVAEKIFDGSSHVNVSHIIHDLSFG PKYPGIHNPLDETTRILHDTSGTFKYYIKLRLDKYGHIIGTEYLNDLVEKEHGTHNHDHDHEHE DEQKKQEHTFNEDAEKMVKSVKQAMENGEGCRVYGVLDVQRVAGNFHISVHGLNIFVAEKIFDG SSHVNVSHIIHDLSFGPKYPGIHNPLDETTRILHDTSGTFKYYIKLRLDKYGHIIGTEYLNDLV EKEHGTHNHDHDHEHEDEQKKQEHTFNEDAEKMVKSVKQAMENGEGCRVYGVLDVQRVAGNFHI SVHGLNIFVAEKIFDGSSHVNVSHIIHDLSFGPKYPGIHNPLDETTRILHDTSGTFKYYIKLRL DKYGHIIGTEYLNDLVEKEHGTHNHDHDHEHEDEQKKQEHTFNEDAEKMVKSVKQAMENGEGCR VYGVLDVQRVAGNFHISVHGLNIFVAEKIFDGSSHVNVSHIIHDLSFGPKYPGIHNPLDETTRI LHDTSGTFKYYIK(+) MIYPLVQNILEFIIHWMRLQGYSMIQVGPSNTISSFAWISMAISLVRSI*(+) MAILIQAKLDIVFEGPTCIMEYPCSLIQWIMNSRIFWTKG*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chu et al., 2017 |