Detail information of BGIOSGA031778_circ_g.4


General Information
CircRNA Name BGIOSGA031778_circ_g.4
ID in PlantcircBase osi_circ_002835
Alias 10:15289473|15290508
Organism Oryza sativa ssp. indica
Position chr10: 15289473-15290508  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA031778
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA031778_circ_g.2 BGIOSGA031778_circ_g.3
Support reads NA
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered BGIOSGA031778-TA:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGAACTTGTAATACTGTGAATCATCATTTTCCCTGGCCTTCAAACTAGATTTCATGTCAACCCA
CATGCTTGTAAACTGGTCAAATGTTTCCTTTAGCGActtgtaagcgttataggtgttgcattct
aaagatggtgcacaagtttgtcgatattccagacaaacacgaagtagatgctcaggcatgagtt
tctcatca
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTGTAAGCGTTATAGGTGTTGCATTCTAAAGATGGTGCACAAGTTTGTCGATATTCCAGACAA
ACACGAAGTAGATGCTCAGGCATGAGTTTCTCATCAAATGTTGAAGATGTCAATTCTGGCAAGT
CTGAAAAAATAATCATAAAATACTGCAAATCAAAATACAGAACTATTTTCTTGCAAATCAAAAT
ACTGCACTGCTTGAAATGACATGGTACGTTACCCTTCAGAATTCTTGCTCCCAGTTGATATGAG
TCCATAAAAGATTGAATTTTCAGGTCATCACTAATTTGGCATTTACTAGGCTGAAATAAATTCA
AAAGAAAAACTACCAATTAGCTATGTACAGAACAACACTAAAGCAATTATTGAACAACAGCTCC
TTAAACAATACTAAAGCAATTATTGAACAACAGTTCCTTTTTTATCCTTCTTTTTTCTAATAGA
TCTGAGAGAAATATGCTGTGCCAGAATGTATAGCGTTATTTTTGTTTCTTGATCCTCATGGACA
TCCAAAAATTACAAATTATAGTGCCATACATATGATTATGAGTTCAAGAAGTTCACAGAAGATC
ATCTCTTTCTCCTGTCACTATTTACCTTCTCAACAAGGTCTGGCGAACCAAATAACTGGTTATG
TATTGTTACAATACATTTCAGAATAGATTCTGGTATGAGATCCCACGAGTCTTCAACAGCACTA
TTTTCCTCATCAGTTCTCTCCTGAAATAAACAGGAATACAGGGTTGATACATAAAAGTGAAAAG
AAATAAAGGCATTGGAAGAGAATCCTCAAACATATGATACCATAATTTTAAGAAAATCCTGCTC
TAACTTTTCTTCAGTATCTGCTACAGCATTGCCTTCTGCATCCATATCTGAAAGTGATGGCACG
TCTCCTTTAAAGATATCATGTATATCAATGATACGGGACCTGAACTTGTAATACTGTGAATCAT
CATTTTCCCTGGCCTTCAAACTAGATTTCATGTCAACCCACATGCTTGTAAACTGGTCAAATGT
TTCCTTTAGCGA
Conservation Information
Conserved circRNAs osa_circ_006985*
PMCS
Functional Information
Coding potential Y
Potential coding position 15290477-15289475(-)
15290494-15289558(+)
Potential amino acid sequence MWVDMKSSLKARENDDSQYYKFRSRIIDIHDIFKGDVPSLSDMDAEGNAVADTEEKLEQDFLKI
MERTDEENSAVEDSWDLIPESILKCIVTIHNQLFGSPDLVEKPSKCQISDDLKIQSFMDSYQLG
ARILKDLPELTSSTFDEKLMPEHLLRVCLEYRQTCAPSLECNTYNAYKSLKETFDQFTSMWVDM
KSSLKARENDDSQYYKFRSRIIDIHDIFKGDVPSLSDMDAEGNAVADTEEKLEQDFLKIMERTD
EENSAVEDSWDLIPESILKCIVTIHNQLFGSPDLVEKPSKCQISDDLKIQSFMDSYQLGARILK
DLPELTSSTFDEKLMPEHLLRVCLEYRQTCAPSLECNTYNAYKSLKETFDQFTSMWVDMKSSLK
ARENDDSQYYKFRSRIIDIHDIFKGDVPSLSDMDAEGNAVADTEEKLEQDFLKIMERTDEENSA
VEDSWDLIPESILKCIVTIHNQLFGSPDLVEKPSKCQISDDLKIQSFMDSYQLGARILKDLPEL
TSSTFDEKLMPEHLLRVCLEYRQTCAPSLECNTYNAYKSLKETFDQFTSMWVDMKSSLKAREND
DSQYYKFRSRIIDIHDIFKGDVPSLSDMDAEGNAVADTEEKLEQDFLKIMERTDEENSAVEDSW
DLIPESILKCIVTIHNQLFGSPDLVEKPSKCQISDDLKIQSFMDSYQLGARILKDLPELTSSTF
DEKLMPEHLLRVCLEYRQTCAPSLECNTYNAYK(-)
MFPLATCKRYRCCILKMVHKFVDIPDKHEVDAQA*(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021