Detailed infomation of each circRNA
General Information | |
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CircRNA Name | BGIOSGA031778_circ_g.4 |
ID in PlantcircBase | osi_circ_002835 |
Alias | 10:15289473|15290508 |
Organism | Oryza sativa ssp. indica |
Position | chr10: 15289473-15290508 JBrowse» |
Reference genome | Oryza_indica.ASM465v1.42 |
Type | e-circRNA |
Identification method | find_circ |
Parent gene | BGIOSGA031778 |
Parent gene annotation | NA |
Parent gene strand | - |
Alternative splicing | BGIOSGA031778_circ_g.2 BGIOSGA031778_circ_g.3 |
Support reads | NA |
Tissues | leaf |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | BGIOSGA031778-TA:4 |
Conservation Information | |
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Conserved circRNAs | osa_circ_006985* |
PMCS |
Functional Information | |
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Coding potential | Y |
Potential coding position |
15290477-15289475(-) 15290494-15289558(+) |
Potential amino acid sequence |
MWVDMKSSLKARENDDSQYYKFRSRIIDIHDIFKGDVPSLSDMDAEGNAVADTEEKLEQDFLKI MERTDEENSAVEDSWDLIPESILKCIVTIHNQLFGSPDLVEKPSKCQISDDLKIQSFMDSYQLG ARILKDLPELTSSTFDEKLMPEHLLRVCLEYRQTCAPSLECNTYNAYKSLKETFDQFTSMWVDM KSSLKARENDDSQYYKFRSRIIDIHDIFKGDVPSLSDMDAEGNAVADTEEKLEQDFLKIMERTD EENSAVEDSWDLIPESILKCIVTIHNQLFGSPDLVEKPSKCQISDDLKIQSFMDSYQLGARILK DLPELTSSTFDEKLMPEHLLRVCLEYRQTCAPSLECNTYNAYKSLKETFDQFTSMWVDMKSSLK ARENDDSQYYKFRSRIIDIHDIFKGDVPSLSDMDAEGNAVADTEEKLEQDFLKIMERTDEENSA VEDSWDLIPESILKCIVTIHNQLFGSPDLVEKPSKCQISDDLKIQSFMDSYQLGARILKDLPEL TSSTFDEKLMPEHLLRVCLEYRQTCAPSLECNTYNAYKSLKETFDQFTSMWVDMKSSLKAREND DSQYYKFRSRIIDIHDIFKGDVPSLSDMDAEGNAVADTEEKLEQDFLKIMERTDEENSAVEDSW DLIPESILKCIVTIHNQLFGSPDLVEKPSKCQISDDLKIQSFMDSYQLGARILKDLPELTSSTF DEKLMPEHLLRVCLEYRQTCAPSLECNTYNAYK(-) MFPLATCKRYRCCILKMVHKFVDIPDKHEVDAQA*(+) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Huang et al., 2021 |