Detail information of Os10g0456900_circ_ig.4


General Information
CircRNA Name Os10g0456900_circ_ig.4
ID in PlantcircBase osa_circ_006985
Alias Os_ciR3605
Organism Oryza sativa
Position chr10: 16718990-16720025  JBrowse»
Reference genome IRGSP-1.0.38
Type   ig-circRNA
Identification method CIRCexplorer, find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing NA
Support reads 2/2
Tissues root/shoot
Exon boundary   No-No
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGAACTTGTAATACTGTGAATCATCATTTTCCCTGGCCTTCAAACTAGATTTCATGTCAACCCA
CATGCTTGTAAACTGGTCAAATGTTTCCTTTAGCGActtgtaagcgttataggtgttgcattct
aaagatggtgcacaagtttgtcgatattccagacaaacacgaagtagatgctcaggcatgagtt
tctcatca
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTGTAAGCGTTATAGGTGTTGCATTCTAAAGATGGTGCACAAGTTTGTCGATATTCCAGACAA
ACACGAAGTAGATGCTCAGGCATGAGTTTCTCATCAAATGTTGAAGATGTCAATTCTGGCAAGT
CTGAAAAAATAATCATAAAATACTGCAAATCAAAATACAGAACTATTTTCTTGCAAGTCAAAAT
ACTGCACTGCTTGAAATGACATGGTACGTTACCCTTCAGAATTCTTGCTCCCAGTTGATATGAG
TCCATAAAAGATTGAATTTTCAGGTCATCACTAATTTGGCATTTACTAGGCTGAAATAAATTCA
AAAGAAAAACTACCAATTAGCTATGTACAGAACAACACTAAAGCAATTATTGAACAACAGCTCC
TTAAACAATACTAAAGCAATTATTGAACAACAGTTCCTTTTTTATCCTTCTTTTTTCTAATAGA
TCTGAGAGAAATATGCTGTGCCAGAATGTATAGCGTTATTTTTGTTTCTCGATCCTCATGGACA
TCCAAAAATTACAAATTATAGTGCCATACATATGATTATGAGTTCAAGAAGTTCACAGAAGATC
ATCTCTTTCTCCTGTCACTATTTACCTTCTCAACAAGGTCTGGCGAACCAAATAACTGGTTATG
TATTGTTACAATACATTTCAGAATAGATTCTGGTATGAGATCCCACGAGTCTTCAACAGCACTA
TTTTTCTCATCAGTTCTCTCCTGAAATAAACAGGAATACGGGGTTGATACATAAAAGTGAAAAG
AAATAAAGGCATTGGAAGAGAATCCTCAAACATATGATACCATAATTTTAAGAAAATCCTGCTC
TAACTTTTCTTCAGTATCTGCTACAGCATTGCCTTCTGCATCCATATCTGAAAGTGATGGCACG
TCTCCTTTAAAGATATCATGTATATCAATGATACGGGACCTGAACTTGTAATACTGTGAATCAT
CATTTTCCCTGGCCTTCAAACTAGATTTCATGTCAACCCACATGCTTGTAAACTGGTCAAATGT
TTCCTTTAGCGA
Conservation Information
Conserved circRNAs osi_circ_002835* osi_circ_008460
PMCS 0.455022101
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015;Chu et al., 2017