Detail information of BGIOSGA031778_circ_g.2


General Information
CircRNA Name BGIOSGA031778_circ_g.2
ID in PlantcircBase osi_circ_008459
Alias Chr10:18796626_18797350(ZS97RS2)
Organism Oryza sativa ssp. indica
Position chr10: 15289472-15290196  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRI2
Parent gene BGIOSGA031778
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA031778_circ_g.3 BGIOSGA031778_circ_g.4
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   CT-TA
Number of exons covered BGIOSGA031778-TA:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CAAATAACTGGTTATGTATTGTTACAATACATTTCAGAATAGATTCTGGTATGAGATCCCACGA
GTCTTCAACAGCACTATTTTCCTCATCAGTTCTCTCccttgtaagcgttataggtgttgcattc
taaagatggtgcacaagtttgtcgatattccagacaaacacgaagtagatgctcaggcatgagt
ttctcatc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTTGTAAGCGTTATAGGTGTTGCATTCTAAAGATGGTGCACAAGTTTGTCGATATTCCAGACA
AACACGAAGTAGATGCTCAGGCATGAGTTTCTCATCAAATGTTGAAGATGTCAATTCTGGCAAG
TCTGAAAAAATAATCATAAAATACTGCAAATCAAAATACAGAACTATTTTCTTGCAAATCAAAA
TACTGCACTGCTTGAAATGACATGGTACGTTACCCTTCAGAATTCTTGCTCCCAGTTGATATGA
GTCCATAAAAGATTGAATTTTCAGGTCATCACTAATTTGGCATTTACTAGGCTGAAATAAATTC
AAAAGAAAAACTACCAATTAGCTATGTACAGAACAACACTAAAGCAATTATTGAACAACAGCTC
CTTAAACAATACTAAAGCAATTATTGAACAACAGTTCCTTTTTTATCCTTCTTTTTTCTAATAG
ATCTGAGAGAAATATGCTGTGCCAGAATGTATAGCGTTATTTTTGTTTCTTGATCCTCATGGAC
ATCCAAAAATTACAAATTATAGTGCCATACATATGATTATGAGTTCAAGAAGTTCACAGAAGAT
CATCTCTTTCTCCTGTCACTATTTACCTTCTCAACAAGGTCTGGCGAACCAAATAACTGGTTAT
GTATTGTTACAATACATTTCAGAATAGATTCTGGTATGAGATCCCACGAGTCTTCAACAGCACT
ATTTTCCTCATCAGTTCTCTC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021