Detail information of BGIOSGA034174_circ_g.4


General Information
CircRNA Name BGIOSGA034174_circ_g.4
ID in PlantcircBase osi_circ_009494
Alias Chr11:9392784_9397521(ZS97RS2)
Organism Oryza sativa ssp. indica
Position chr11: 7692749-7697485  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRI2, CIRCexplorer2
Parent gene BGIOSGA034174
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA034174_circ_g.3 BGIOSGA034174_circ_g.5 BGIOSGA034174_circ_g.6 BGIOSGA034174_circ_g.7 BGIOSGA034174_circ_g.8 BGIOSGA034174_circ_g.9 BGIOSGA034174_circ_g.10 BGIOSGA034174_circ_g.11
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   CT-TA
Number of exons covered BGIOSGA034174-TA:6
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GTAGATCCAGATGATTCGAGTCGATGTTTGTAGTTTGAGCATTCACATAATCCTCCAATAAATT
AATAGCTTTATCAATTTGACCACAGTCCCTGTACATcctttcgattagcatactcaatattcag
tgtttcaagaatgggtataagaatggtgcccacaaagtcctcgaacatgcctttattgtaatat
atgttcgc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTTTCGATTAGCATACTCAATATTCAGTGTTTCAAGAATGGGTATAAGAATGGTGCCCACAAA
GTCCTCGAACATGCCTTTATTGTAATATATGTTCGCAAGGTGCATCTTTACTTTCCCATCAAGC
CACCATGGCTTCGGTTGATCTGTAGCAGACTTTGACCCTACAAATGCCATTAAAAAAAAAACTG
AACAACGAAAGCAGCTAATTGCATTGAACAAGCTAGGGATAGTATACCTGAATTGTTAGGAGGA
GAAAGCAAAACAATAGCTTCGTCACTCTTATCCACATCAACAAAAAGAGAGGATAAAGTTATTC
GCACATCAATGTTGTCCTCCATTCTTTGCAAGGCTATGAAAGAATAAAGAAAACTACATCAAAG
ATTCAAAATTGATAATAATGGAAAAAACTAACTCAAAAGAAATTAAATAAACAAAACCTCATGC
CGAGGATGTTGAATTCCCAGCATTAGGGGTAACCGCTCCTTTACATAGATTCAAACCTCACATA
TGTTCTAAAAATTCTAAATGAATATACCTTCCAAATTCACAATCTTATATGTTATGGACATTGA
TTCATGGATAGGATAAGGGTCTGAAACAGGGATAAAGGTGAGATCGCTCTCATCGGTGTTAGCC
TTGTCCCGATCATCAGGAGACACTAATACATAAGGTTAGGCCTAGCTTGATCAGAGTCTCCTAG
TGATCAGGACGAGCCCAGCACCAACAATAGCAATATTGTTTACATCCCAACTTTGAATAATTGT
CATTTCTATTGCACAAATCTCAGAGCAATTCAAATGGATAGTATAGCAGGAGTACATGAAAGTC
CAGAAATGTGGACTTACATTTCTCAAAAGAACCTTAGAAATACATGTAACACCCCAGCAACTAC
AATAAGCCTGAGACGTTACTAAACAACCATGAAACAATGCCAAAACATTGAAATTCTGCAGAAT
CTTCTCACAAAGAAAAGTATTATGGAAGCATCAATATATAGATATGATATAATCTAGAGCCAAC
AGCATGCTAACAAGTAAAAACAAACTAAGCAAAGTTAGATAAACCAAGTTTTACGTCTCAAGTG
TTCATTTAAACTATTAACTCCATAAGTACATCTATTCTTCATAAATATGATAGCACAACATTTA
AAAATTAAATAGGAACATGGCGTGCAAAAGTTTTGGTACTCCCAACCTCTAAAGTAGGCATGCC
ACATCAAATACCTGGAAAGGCTGTAAGGGTGTGAGGATAAATCTCAACTAGCGAACAGCTTTAA
CAAATTCTTTAAACTACAAGTTCATTAGGTCATGATATAAATACAGGAGTACAAGATCATTTTA
AGTAATTGTCATTCTGTCAGACCATAATGAAAACGAAATTTCCGTTTTTCTTCTAGACGAATAC
GATATTGCTATCTTTTAAAGATACTTTAGGATCTAGGTATTTTACTAGTTAGTCCCGGTAAAGC
TCCCAGACGGCGTATTTTTCGAAACGAGGTCCTCAGTAACGAGACATAAAGACTCCTTTTTTTT
TCCTTTTTTTTCTTTTTCGTATAAAATCCAAATGAAAACTGAAAAAACAAGTTAAAACTTGCAA
ATAAACAAACTTCATAACTTCATGAGTGAAAATAAAGCAACATTGTGAGAAGCAAACACATCTC
AGATATAACTCCAATTGTATAACTTCCATACGAGAATTGCAATAAGTTATGTAGAGTGGCTTCC
ATAGGAAAACACCTATTGCAGTTTTGCTAGATGTTATACAATCGGGGTTATCTTTGAGAAGAGT
TTGCTTCTTGAGAAGTTATGCAGATGTGGCTTTACTTTCACCAATGAAGTTATAAAGTTTATGT
AAAAGTTTAACTTAATTTTTTTAATGAGGTTGCACTCTCGTATTTAAATAATCACCTAATGAAC
TTGTAGCTTAAATAAACTGTTAAAGCAGTTTGCTTGCTGAGCAATCCTTCTAGGTACTTGATGT
GGCATGCTTGCTTGAGGGGATGGGAGTAGCAACACACTTCTGCACGTCATGTTCACATTTAATC
TTTAAATGTTAAGTTGTCATTTTAATAAACCATAATGTATTTATTGAGTTAATAGGCTAAATGA
ACACTTGAGATGTAAAACTTAGTCTATTTATCTTTGTTTAGGTTGTTTTACTTGTTAGCATGTT
TTTTGCTCCTGATTATATTACCAGCATCTTAGGCTTGTTGTAATTGCTAGGGTGTTACAATATT
TTTTTTATATTTGTTCTGTTTTGTCTTAGGCTTGTTGTAATACAATATTTTTTTTTCATTTGTT
CTGATTTGTCTTTTCTGTATGGCCATGTCATGTCTGCATTTCTCAGAATCCTAGAATGTCTCGT
GACTCTTGTCTATGATTTAAGAAACTCAATCTCCATAAAGTCCATTCAAATAACAGTCACCACC
CCTGACAATAGAATTTATTCTCTCTTTTGTAATACCATATTCTAACGATTTTGAGAACAATGCA
TAGAATCTGGTGTAGGGAATGCAAAGCAGAACAATTATGGAATATTATGAGAATATCAGAAAGC
AAATTGATTCAGAAAAGAAGAGACAGGGCATAAGATCCTCTCCATGTAATACTACTTTCAAAGC
TCCAACAAAACATTGCTGTGACGGATTTTCACCAGCATTATCTTTTTATGTATATCTTAACTTC
TTAAGCAATCTCAAGTTTGCTACCAAAGAGGAAGGGTTTCATGAAGGAAATAGAACAGAACCTT
TCTGAAAGTAAGGAATTGCTTTCCTTTTCTCCCCTATGACCATGTAGCATTGACCAACTTTCAC
ATATGAACTACCCTGAAACAAGTTATAGTATATCAAACTAGAGAAGGGTGAAGGAAATAAAATA
TACATACAACTTCCTCAATCCCTTAATGGACTAGGTGATTGCGATGGTGTGCTTTACACCCATC
CTTTCATTTCCAAAATATCATTTATTGATGGATTTCTGTAGGCATGTATTTATAGAATCTTTTA
TGAAGGACTGCATCCTTTGTACATGTGTAAGCAAGTGACTAGTTGATCCATTGTGAATTAGAAT
GTTTTCTGTAGATTTTTAAATACCTTTTTTTTATGAAGCATTAAAGCAGACAAAGCCCATTCCC
CATTCCTGATCATGGTACCATTATCAAGCCTTTAAAGAGCATGTACATTCTAATCAAATTTGGA
ACATTTGTGGCTAGCTAGAAGATCTACATGCTGTTAAAAGCACATTCTCAAATGATTAATTGAT
TTTTTTTATCATATTTATGTTCAAATCAGCTAATAGGAACTGCTTTGCCCCCAACTTCTTTCAG
TAGCAGTTGCCTGGCTTCACCTCTTCTGGGTTACGTAGTTACATAATTTTATTCCACTATAACT
CACGACTAATGGATAGGTTCAAATTTATTATGTTGAGATGGGCTTCCTTCCCCTTCCAAAAATT
ATACTCATTGGAATCAAACCAGATGTTTGTTTCCAATTACCAAGTCTATCATAATTGTATTATG
CACTTATAGCATTACCTTGATAAGTTATATATGTCAAAAGATTCACAGGATTGAATTGATCTTC
TGAAGACTTCACAGCATTTAGGAAAAAGTTCGCTTAACACTTTGTGGTTAGTCAATGTGGACAA
TGACGTGGTGGGTGGTGTTGCTTGCATGACACACACACCAAAGCATGTTTCACCCAAGTTTGCC
CAAGCAATCACTTTCTTTAGTCAGCAAGCCCAGAAACCACCTCCAGTGCTATTTGTACTTCTTC
TCCAAGCTATTCTGCTAGTTAAAAAATATTTAACTGAATCCATCACCATGTCACTGTTCTCGTC
ATCGTCCACGTGGGGAAAACACTTACAATACAACTCCAGGGGGGAGGGGGGGGTTTCAAATAGT
TGTTCATGCGTTGGGGAGTAGAATATCAGGTTTTGTACTTCAGGGGGTTAAGTAGAGGTTTTGG
CTTTTTGCCATTATTTATAAATCATATGGTCCTAATTATCATTTGTTCCATGCTTAATTGAACG
CTAGAAACATGTAATAGTGAAACAGAACTTCAAAATGAAGCAAATCGGCTACTTACATCATTAT
GAACAGCAACATCTTCAATCATCAGGTAAAACTTTATTGCATACTCATATTGTCCTAAATTTTC
GAGAGTGCTAGCAACCTCCTTGATCACATCGGTGTTATCTTTTGAACGCTCCAGATGCACATTC
TGAAGAAACACCTGCACAAGTAATACCAATTCAATAACTAAGAAACTCAAAACTATACGTTGAA
GTAGTCTTGGATACAGTATATACACAAGCACAATCTAATCTTGCAGAGTACAACCTGTTATCAG
AGCAATTTATAGTCATATCGAGGATTTATAGTGTCTAATAAACCAATGGTAGCAAAAGGTGGGT
TTTGACTAATCAAGGATAAATTATGTCAAGTGTGTGCTATAATGGAACAGAACTGGGACAAACC
TCGGCATGCTTCATATCTCCAAGATAAGCATGGCAGATTACAGCTTTTGCCTGCAATTGTACTG
GCAAATTGTGTTGAGATCCAAACACTATATGTGCTCTATCAATCAGCCTCAATGCTTCATTATA
GGCATTATTTCTCAGATAAAGGGATATCAGTAGATCCAGATGATTCGAGTCGATGTTTGTAGTT
TGAGCATTCACATAATCCTCCAATAAATTAATAGCTTTATCAATTTGACCACAGTCCCTGTACA
T
Conservation Information
Conserved circRNAs osa_circ_009038
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021