Detail information of AT3G14720_circ_g.5


General Information
CircRNA Name AT3G14720_circ_g.5
ID in PlantcircBase ath_circ_021805
Alias NA
Organism Arabidpsis thaliana
Position chr3: 4947157-4947901  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene AT3G14720
Parent gene annotation Mitogen-activated protein kinase 19
Parent gene strand +
Alternative splicing AT3G14720_circ_g.2 AT3G14720_circ_g.3 AT3G14720_circ_g.4 AT3G14720_circ_g.6 AT3G14720_circ_g.7 AT3G14720_circ_g.8 AT3G14720_circ_g.9 AT3G14720_circ_g.10 AT3G14720_circ_g.11
Support reads 1
Tissues root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered AT3G14720.1:3
AT3G14720.2:3
AT3G14720.3:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATGACATTAGAGAACTAATATACAGGGAGATACTGGAATACCATCCACAGCTGCTCAAGGATTA
TATGAACTCTGAAGGCTCAAGTTTTCTATATCCTAGtatactccagcaattgacatttggagca
ttggctgcatcttcgctgaggtattaacagggaagcctttgtttccaggaaaaagtgttgtcca
tcagttag
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 515
Transcript exons: 4947157-4947306,4947383-4947538,4947693-4947901
TATACTCCAGCAATTGACATTTGGAGCATTGGCTGCATCTTCGCTGAGGTATTAACAGGGAAGC
CTTTGTTTCCAGGAAAAAGTGTTGTCCATCAGTTAGACTTGATTACCGATCTTCTTGGCACACC
AAAATCAGAGACCATTGCTGGGGTGCGAAATGAAAAGGCTAGAAAATATTTGAACGAAATGAGG
AAGAAAAATCTTGTCCCCTTTTCGCAAAAGTTTCCTAACGCAGATCCTTTAGCATTGCGTCTTC
TGCAAAGACTGTTGGCTTTTGATCCAAAGGATAGGCCGACTGCTGCAGAGGCGCTGGCTGATCC
TTATTTTAAGTGCCTTGCTAAGGTTGAAAGAGAACCCTCTTGTCAGCCGATTTCGAAGATGGAA
TTTGAGTTTGAAAGAAGAAGGTTGACAAAGGATGACATTAGAGAACTAATATACAGGGAGATAC
TGGAATACCATCCACAGCTGCTCAAGGATTATATGAACTCTGAAGGCTCAAGTTTTCTATATCC
TAG

Genomic sequence TATACTCCAGCAATTGACATTTGGAGCATTGGCTGCATCTTCGCTGAGGTATTAACAGGGAAGC
CTTTGTTTCCAGGAAAAAGTGTTGTCCATCAGTTAGACTTGATTACCGATCTTCTTGGCACACC
AAAATCAGAGACCATTGCTGGGGTATGTTCTTTTTGCTTCCACATTACCAAGTTCTTTTTTCTG
CTGGGAGGAGACTAATAATATGTCTCTAATGCAGGTGCGAAATGAAAAGGCTAGAAAATATTTG
AACGAAATGAGGAAGAAAAATCTTGTCCCCTTTTCGCAAAAGTTTCCTAACGCAGATCCTTTAG
CATTGCGTCTTCTGCAAAGACTGTTGGCTTTTGATCCAAAGGATAGGCCGACTGCTGCAGAGGT
GTGTGTTCTGTCATTATATTGTCAGTTGTTACTAGTAGATTCTTTTTCTTTCGTCCCTATTAGA
ACAACTGACTTGCTTCTAGTGCAGTAAGCTCTAGTTCATATTTCAGCTCCTTACATGGTGATGT
TAACACTGTGATGTTCTTTGACAGGCGCTGGCTGATCCTTATTTTAAGTGCCTTGCTAAGGTTG
AAAGAGAACCCTCTTGTCAGCCGATTTCGAAGATGGAATTTGAGTTTGAAAGAAGAAGGTTGAC
AAAGGATGACATTAGAGAACTAATATACAGGGAGATACTGGAATACCATCCACAGCTGCTCAAG
GATTATATGAACTCTGAAGGCTCAAGTTTTCTATATCCTAG
Conservation Information
Conserved circRNAs NA
PMCS 0.374178729
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017