Detail information of AT3G14720_circ_g.6


General Information
CircRNA Name AT3G14720_circ_g.6
ID in PlantcircBase ath_circ_021806
Alias 3:4947259-4947527
Organism Arabidpsis thaliana
Position chr3: 4947259-4947527  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method find_circ; CIRI2
Parent gene AT3G14720
Parent gene annotation Mitogen-activated protein kinase 19
Parent gene strand +
Alternative splicing AT3G14720_circ_g.2 AT3G14720_circ_g.3 AT3G14720_circ_g.4 AT3G14720_circ_g.5 AT3G14720_circ_g.7 AT3G14720_circ_g.8 AT3G14720_circ_g.9 AT3G14720_circ_g.10 AT3G14720_circ_g.11
Support reads 3
Tissues root
Exon boundary   No-No
Splicing signals   CT-AC
Number of exons covered AT3G14720.1:2
AT3G14720.3:2
AT3G14720.2:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AAAAATCTTGTCCCCTTTTCGCAAAAGTTTCCTAACGCAGATCCTTTAGCATTGCGTCTTCTGC
AAAGACTGTTGGCTTTTGATCCAAAGGATAGGCCGAttgattaccgatcttcttggcacaccaa
aatcagagaccattgctggggtatgttctttttgcttccacattaccaagttcttttttctgct
gggaggag
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TTGATTACCGATCTTCTTGGCACACCAAAATCAGAGACCATTGCTGGGGTATGTTCTTTTTGCT
TCCACATTACCAAGTTCTTTTTTCTGCTGGGAGGAGACTAATAATATGTCTCTAATGCAGGTGC
GAAATGAAAAGGCTAGAAAATATTTGAACGAAATGAGGAAGAAAAATCTTGTCCCCTTTTCGCA
AAAGTTTCCTAACGCAGATCCTTTAGCATTGCGTCTTCTGCAAAGACTGTTGGCTTTTGATCCA
AAGGATAGGCCGA
Conservation Information
Conserved circRNAs NA
PMCS 0.199107187
Functional Information
Coding potential NA
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Philips et al., 2020